All posts by: Sarah Hansen, M.S. '15


Quantum computing, but even faster? UMBC researchers explore the possibilities with new NSF grant

Quantum computers have the potential to revolutionize communications, cybersecurity, and more, by dramatically speeding computation, researchers say. But as Sebastian Deffner notes, “Even quantum computing has shortcomings.”

There may be ways to work around some of quantum computing’s limits, however, further enhancing its speed and other aspects of performance. Deffner, assistant professor of physics at UMBC, and Nathan Myers, a Ph.D. student in Deffner’s research group, will explore techniques to do that with a new three-year, $300,000 grant from the National Science Foundation. And in the process, they just might redefine the fundamental laws of physics.

From paper to the real world

Typically, the quantum systems Deffner’s group (and anyone else) have studied are linear, meaning they are defined by mathematical equations that appear as a line when graphed. However, Deffner says, based on the math, “non-linear systems have very unique capabilities that allow you to circumvent many of the standard problems of linear quantum computing.”

A two-line proof in the grant proposal shows that in theory, non-linear systems can operate much faster than linear quantum systems, and possibly perform better in other ways, too. “Now the question is,” Deffner says, “is that just something you can write on paper, or does it actually play a role in applications?”

Because it doesn’t matter how fast a system could be in theory, if, to go that fast, most of the energy input is released as heat instead of being used for computations. In that case, the total energy required to get anything useful accomplished makes operating such a device impractical in the real world. 

That’s why Deffner’s research group focuses on a burgeoning new field known as quantum thermodynamics—the study of the relationships between heat and other forms of energy in quantum systems. Previously, they developed and refined the idea of the “quantum speed limit,” which quantifies the limits of linear quantum systems. Now they’ll expand that work to non-linear systems.

The beauty of math

So, why is it that most of the quantum systems researchers have studied are linear? And where do non-linear systems come in? 

Well, quantum systems are composed of many particles that are constantly interacting with each other in a linear fashion. Unfortunately, it’s impossible to precisely define and measure all of those interactions using today’s technology. It is possible, however, to approximate the sum of all of those linear interactions. That approximation can be added to the linear equation describing the overall system as a single term. And here’s the catch: That term is non-linear.

The UMBC physics building fronted by a large quad dusted in snow
UMBC’s Physics Building stands on the left in winter 2019. (Photo by Marlayna Demond ’11/UMBC).

By accounting for these particle interactions, “we can potentially get a non-linear speed-up from an underlying linear system. That’s the goal,” Myers says. But—and here’s where the thermodynamics comes in—“Say we get this non-linear system,” Myers says. “What energy cost are we paying for it? Is it worth it?”

So a goal of the new project is to better understand the thermodynamics of these non-linear systems. The findings would help quantify how much faster they might be than linear quantum systems, and if it would be feasible to create and run them in the real world.

A monumental leap

The shift from linear to non-linear systems might seem incremental, but it’s actually monumental. Sadi Carnot, a French engineer, developed the field of thermodynamics in the early 19th century to describe steam engines. Then, in the late 20th century, researchers overhauled his foundational principles to apply them to linear quantum systems.

“We have all these statements of thermodynamics that we just recently formulated for quantum systems,” Deffner says. But non-linear systems are so different that another retrofit won’t be sufficient. “What we need to do is go back to the beginnings of quantum thermodynamics and just redo everything.”

They’ll start by developing three foundational mathematical statements describing the non-linear systems. “Those statements will build the foundation upon which we then can build the whole theory,” Deffner says. They’ll test their work on two major algorithms used in database searches and encryption technology.

“Hopefully our work will lead to a broader exploration of how non-linear systems in general can be used to speed up a whole range of quantum devices, or enhance their performance in other ways,” Myers says.

A global UMBC team

During the pandemic, the research group is on four continents and in “I don’t know how many time zones,” according to Deffner. “I told my students from the beginning that we would have to adapt,” he adds. The lab group stays in touch via Slack, WhatsApp, and weekly group meetings. But the work itself is surprisingly low-tech.

a pile of books and papers and a white board covered in handwritten equations
Nathan Myers’ at-home work station. (Photo courtesy of Myers)

“The majority of it is pen and paper,” Myers says, plus a lot of reading. “Doing good theory work requires having a really broad knowledge base of what’s being done in different disciplines of physics. Real progress happens when someone realizes that a technique or tool from another area is also applicable to their own problem.”

Myers loves the work, and says his entire thesis grew out of a single question he asked Deffner after class one day. Deffner’s response? “That’s a great question. Want to do a project?”

“It all started with one root question that’s then grown a lot of different branches,” he says. “That’s one of the things that makes it so exciting—you’re following this train of thoughts. You’re pulling at the thread in the sweater, it’s unraveling more and more, and you’re seeing how many different things can grow out of this single question. It’s exciting and it’s fun.”

Disruptive discoveries

In the process of having fun, Myers and Deffner will reformulate thermodynamics for non-linear quantum systems, figure out whether building them is feasible, and get an idea of what their perks might be. Deffner’s team just might also come up with something revolutionary. 

Myers tells the story of Carnot, who, in an attempt to optimize the disruptive technology of his day, ended up conceiving the laws of thermodynamics. “By trying to determine the most efficient steam engine possible, he ended up deriving perhaps the most fundamental law in all of physics,” Myers says. 

“Now we’re in a similar position to Carnot,” he suggests. “We have this new disruptive technology that’s emerging—it was steam engines for him, quantum devices for us—so let’s do the same thing, and hope something really incredible falls out of it.”

UMBC’s Translational Life Science Technology program wins Workforce Champion of the Year

UMBC’s newest undergraduate degree, the bachelor of science in Translational Life Science Technology (TLST), has received the inaugural BioBuzz Workforce Champion of the Year award for its contributions to enhancing the regional biotech workforce.

Bill LaCourse, dean of the College of Natural and Mathematical Sciences, envisioned the program as a way to both support students and help fill a workforce gap in the region’s bustling biotech industry. In fall 2018, the college hired Annica Wayman ’99, M6, mechanical engineering, as associate dean for Shady Grove affairs to oversee implementation of the program. The TLST program, a partnership with Montgomery College, enrolled its first students in fall 2019, and its first graduates will earn their degrees this week.

“It was important to me to implement this program because it is innovative and impactful,” Wayman says. “A multidisciplinary curriculum that includes cell biology, bioinformatics, bioprocess design and control, and epidemiology…more accurately reflects what the drug discovery and development process in the industry looks like. It also helps to build more critical thinkers that have an intellectual curiosity.”

Left to right: Jackelyn Flores ’21, Charmaine Hipolito ’20, and Titina Sirak ’20 are some of the first participants in UMBC’s Translational Life Science Technology program. Photo by USG.

Ready for biotech careers

In addition to establishing the TLST program, Wayman and her team have re-launched UMBC’s master’s degree in biotechnology management at The Universities at Shady Grove (USG) campus in Montgomery County. Graduates of both programs are prepared to enter a range of well-paying roles in the local biotech industry.

“UMBC’s TLST degree uniquely prepares students for the many jobs in the growing biotechnology industry where medical products are made,” Wayman writes in a USG blog post. “Among the 300-plus biotech companies in Montgomery County, there will be hundreds of jobs opening in the next few years to work on COVID-19 vaccines and treatments, cell and gene therapy products, and other novel biopharmaceuticals.”

New alumni joining these companies will also help support a leading industry in the region’s economy, particularly important in this economically challenging time.

Club Biotech

Titina Sirak ’20, TLST, is graduating this week with multiple job offers for biotech positions. Her experiences with varied coursework and multiple internships have prepared her to succeed. “From those experiences, I got my foot in the door,” Sirak says.

The support she found at Shady Grove, and in the TLST community in particular, was also key for her progress. “I wouldn’t have been able to do it without Dr. Wayman,” Sirak says. “I was new to this country—I just moved here two years ago.”

“I love the openness and the communication between the students and the professors,” adds Charmaine Hipolito ’20, TLST. Together, Sirak and Hipolito created Club Biotech to help their classmates connect with employers and learn more about the industry.

Wayman has long seen TLST as a way to get students excited about careers in biotechnology, as well as to prepare them for biotech jobs. And the experiences of the program’s first graduates show her that it’s already happening.

Charmaine Hipolito ’20 (center left) and Titina Sirak ’20 (center right) speak with visitors at a celebration for the opening of USG’s new Biomedical Sciences and Engineering Building, November 2019. Photo by USG.

A team effort

Although Wayman has been the implementation lead, she is quick to thank the many others who have coaxed the program into existence and continue to nurture its growth. Receiving the BioBuzz Workforce Champion of the Year award, she says, is a credit to the work of a dedicated team. 

“It is because of the visionary thinking of [Dean] Bill LaCourse, [Vice Provost] Chris Steele, and many others at UMBC; Sanjay Ray, Margaret Latimer, and Collins Jones at Montgomery College; Stewart Edelstein and Mary Lang at USG; and many others, that the TLST program was created, and now has the opportunity to leverage today’s opportunities and tackle today’s challenges,” Wayman said, in accepting the award. “I thank them so much.”

Wayman continued, “We’re also grateful to the many companies who have collaborated with the TLST program to support applied, practical teaching, hands-on learning, and student internships.” Wayman, LaCourse, and the rest of the TLST team look forward to continuing to create opportunities for students to thrive in the biotech industry, as they address global challenges through gene therapy, vaccine development, and future biotech innovations.

Several members of the UMBC team involved in launching the TLST program. From left to right: President Freeman Hrabowski; Dean Bill LaCourse; Phil Farabaugh, professor and chair of biological sciences; Christopher Austin, vice-chair of the USG board of advisors and director of the National Center for Advancing Translational Sciences; Annica Wayman, associate dean for Shady Grove affairs; Christopher Steele, vice provost for the Division of Professional Studies; and Antonio Moreira, vice provost for academic affairs. Photo by Marlayna Demond 11 for UMBC.

Header image: Titina Sirak ’20, TLST, speaks at the TLST launch event in 2019. Montgomery College President DeRionne Pollard is behind her. The TLST program is a partnership with Montgomery College. Photo by Marlayna Demond ’11 for UMBC.

UMBC’s newest biotech grads launch careers that will make a difference

UMBC’s Translational Life Science Technology (TLST) degree is the new kid on the block among UMBC undergraduate programs, and its first graduates will earn their degrees this month. These students joined the program—a partnership with Montgomery College—in fall 2019. Through TLST they have gained deep knowledge of all aspects of the biotech industry and hands-on (and virtual) experience through internships and course work. They have also developed genuine and caring relationships with their classmates and professors, and feel ready to launch biotech careers.  

Jobs of the future

Take Titina Sirak ’20: She’s already received multiple job offers at biotech companies. She also plans to pursue a graduate degree in data science. 

Sirak completed in-person internships in traditional wet labs at the University of Maryland and the University of Maryland School of Medicine. Then, she did a remote internship with Kite Pharma, where she helped design a system for managing workflow, minimizing waste, and maximizing efficiency in their pharmaceutical production.  

Students in lab coats in a science laboratory.
Charmaine Hipolito ’20 (center) and Titina Sirak ’20 (right) speak with visitors at a celebration for the opening of USG’s new Biomedical Sciences and Engineering (BSE) Building in November 2019. Photo by USG.

“That’s the thing about the TLST major: When you’re studying biotech, you can be in any field. You could be on the data side, you could be in the lab doing manufacturing, you could be planning, you could be on the business side of it,” Sirak says. “That’s how TLST is different from other majors, because you take a whole range of classes. It helps you open up your mind to different sides of biotech.”

Sirak says she loves the manufacturing side and hands-on lab work, but plans to pursue data science because it is where jobs will be most plentiful moving forward. “Lots of things are going to be automated. But if you just look at all the systems that are required to make one pill, every step is recorded data,” she says. “Humans are just figuring out how to deal with all of it. I’m really interested in doing a graduate degree in that, because I want to learn how to analyze and manage data.”

Close-knit community

Sirak’s classmate, Charmaine Hipolito ’20, TLST, also already has more than one biotech job offer in hand. Hipolito originally planned to become a doctor, but a position as a medical assistant helped her realize she wanted to explore other possibilities in the biomedical field. Then she found TLST. “When I looked at the requirements, it seemed like it was just right for what I wanted to do,” she says. “I love lab work and research, and…you’re still helping people. So I thought, ‘Let me try this.’”

A college campus quad
The Universities at Shady Grove campus. Photo by Marlayna Demond ’11 for UMBC.

The program has met her expectations and more. “I really like the classes that the program offered,” Hipolito says. “I feel like those lab courses will really help me right after college, because most of the techniques that we did in class are the things that I’ll be doing in the jobs that are available.”

In addition to the academic program, Hipolito and Sirak both appreciated the closeness of the Shady Grove community.  

“Even if it’s small, Shady Grove has been amazing for me,” Sirak says. “You’re close to your professors. It’s easier to develop that close mentoring relationship. There are small class sizes, which helps you feel more connected to the other students. I’m so glad that UMBC has a campus at Shady Grove.”

“It’s very much like a family, and I like that my classmates are really motivated to learn,” Hipolito adds. “When you’re in that kind of environment, it helps you as well. Everyone is really helping everybody. There’s no competition.”

To further support their classmates, Sirak and Hipolito created Club Biotech. Sirak says, “We try to expose the club members to the professional environment and help them find internships and jobs and build networks.”

Two students flank a dog mascot
Titina Sirak (left) and Charmaine Hipolito with True Grit. Photo by USG.

Real-world connections

Pedram Miraghazadeh, M.P.S. ’20, biotechnology management, is completing a graduate degree at Shady Grove focused on biotech, and he experienced some of the same benefits as the TLST students. “When I first started, I knew I liked biotech, but I wasn’t really sure exactly what I wanted to do,” he says. “Each class was different, so you can find your passion in a specific part of biotechnology.”

Miraghazadeh also felt prepared for his internships because of the hands-on nature of the program. “When I went to the lab, I knew what this centrifuge is going to do, how to clean my hood, how to wear my gown—the simple things that I learned from a book, but now I went to the lab and practiced it.”

Miraghazadeh has a special interest in the regulatory process, which has burst into the national spotlight with the development of COVID-19 vaccines. “I was explaining to all of my friends,” he says. “They always call me asking what’s going to happen with phase 1, phase 2, etc. I learned all that stuff in class, and now I see it in the real world.”

He has also felt supported and welcome in the Shady Grove community and with his professors. Miraghazadeh formed a special connection with Antonio Moreira, vice provost for academic affairs, who taught five of his courses. “As vice provost, he’s always busy, but he always made time for me when I had questions,” he says.

Four administrators in a large hall
From left to right: Annica Wayman, associate dean of CNMS; Antonio Moreira, vice provost for academic affairs; Keith Bowman, dean of the College of Engineering and IT; and Bill LaCourse, dean of CNMS. Photo by Marlayna Demond ’11 for UMBC, taken at the grand opening of the Biomedical Sciences and Engineering Building at USG. The BSE is where many of the core TLST classes take place.

Changing the face of biotech

All three students shared that UMBC and the Shady Grove campus helped them find their way. Staff members Abigail Granger and Chelsea Moyer smooth TLST students’ transition from Montgomery College to UMBC and organize activities to help students connect with each other and the larger UMBC community. Grainger is assistant director of undergraduate recruitment and retention and Moyer is the director for UMBC at the Universities at Shady Grove.

Other key supporters of students in UMBC’s biotechnology programs include lecturer and active biotech professional Jeffrey Robinson ’99, biological sciences; Manik Ghosh, assistant director of the TLST program; and Annica Wayman ’99, M6, mechanical engineering, associate dean for Shady Grove affairs in the College of Natural and Mathematical Sciences.

“All of my professors have supported me, but Dr. Robinson and Dr. Ghosh have been with us through all three semesters of the program, teaching different classes,” Sirak says. Hipolito adds, “Dr. Robinson is really flexible in working with us, and very understanding when it comes to how some students work at different paces.”

Wayman’s leadership was instrumental in developing and implementing the TLST degree, and re-launching the MPS degree at Shady Grove. She firmly believes these intensive efforts have the potential to make a major difference.

“The impact is in the students we educate, who are often from underrepresented groups in STEM. It’s also in the lives that will be saved through the work they will do after graduating from the TLST program,” Wayman shares.  “Additionally, we are able to have impact by addressing the biotechnology workforce crisis in the region.”

“Students leave the program with a greater business acumen and improved leadership and communication skills to complement their technical knowledge and advance their career,” she adds.

Group photo: two administrators and three students
Charmaine Hipolito (second from left) and Titina Sirak (third from left) with Associate Dean Annica Wayman (right) and Dean William LaCourse (left) at a celebration of the TLST program’s launch in May 2019. Photo by Marlayna Demond ’11 for UMBC.

A journey begins

For Wayman, the new graduates’ success is proof that her team’s vision is already coming to life: students are gaining employment in a growing field, feel empowered to make an impact, and know that they have a close network of support.

And for students like Miraghazadeh, UMBC has been more than a degree—it’s been a transformation. He came to the U.S. from Iran seven years ago, spent the first year improving his English, then attended Anne Arundel Community College before graduating from UMBC with his bachelor’s degree. Now he’s completing the biotech MPS with applied internships under his belt. He’s formed meaningful relationships with mentors and peers, and he’s confident and ready to make his own waves.

“UMBC for me,” he shares, “was the place helping me to find out what I want to be.”

Header image: Charmaine Hipolito (right) and Titina Sirak use the microscopes in a teaching lab at the Universities at Shady Grove. Photo by USG.

UMBC team reveals possibilities of new one-atom-thick materials

New 2D materials have the potential to transform technologies, with applications from solar cells to smartphones and wearable electronics, explains UMBC’s Can Ataca, assistant professor of physics. These materials consist of a single layer of atoms bound together in a crystal structure. In fact, they’re so thin that a stack of 10 million of them would only be 1 millimeter thick. And sometimes, Ataca says, less is more. Some 2D materials are more effective and efficient than similar materials that are much thicker.

Despite their advantages, however, 2D materials are currently difficult and expensive to make. That means the scientists trying to create them need to make careful choices about how they invest their time, energy, and funds in development.

New research by Daniel Wines, Ph.D. candidate in physics, and Ataca gives those scientists the information they need to pursue high-impact research in this field. Their theoretical work provides reliable information about which new materials might have desirable properties for a range of applications and could exist in a stable form in nature. In a recent paper published in ACS Applied Materials and Interfaces, they used cutting-edge computer modeling techniques to predict the properties of 2D materials that haven’t yet been made in real life.

“We usually are trying to stay five or so years ahead of experimentalists,” says Wines. That way, they can avoid going down expensive dead ends. “That’s time, effort, and money that they can focus on other things.”

Daniel Wines presents his research at the 2019 American Physical Society meeting in Boston. Photo courtesy Daniel Wines.

The perfect mix

The new paper focuses on the stability and properties of 2D materials called group III nitrides. These are mixtures of nitrogen and an element from group III on the periodic table, which includes aluminum, gallium, indium, and boron. 

Scientists have already made some of these 2D materials in small quantities. Instead of looking at mixtures of one of the group III elements with nitrogen, however, Wines and Ataca modeled alloys—mixtures including nitrogen and two different group III elements. For example, they predicted the properties of materials made of mostly aluminum, but with some gallium added, or mostly gallium, but with some indium added.

These “in-between” materials might have intermediate properties that could be useful in certain applications. “By doing this alloying, we can say, I have orange light, but I have materials that can absorb red light and yellow light,” Ataca says. “So how can I mix that so that it can absorb the orange light?” Tuning the light absorption capabilities of these materials could improve the efficiency of solar energy systems, for example.

Molecular structures of 2D crystals
This figure from Wines’s and Ataca’s paper shows some of the possible alloys made from nitrogen and the group III elements, with the different elements indicated by different colors.

Alloys of the future

Ataca and Wines also looked at the electric and thermoelectric properties of materials. A material has thermoelectric capability if it can generate electricity when one side is cold and the other is hot. The basic group III nitrides have thermoelectric properties, “but at certain concentrations, the thermoelectric properties of alloys are better than the basic group III nitrides,” Ataca says. 

Wines adds, “That’s the main motivation of doing the alloying—the tunability of the properties.”

They also showed that not all of the alloys would be stable in real life. For example, mixtures of aluminum and boron at any concentrations were not stable. However, five different ratios of gallium-aluminum mixtures were stable. 

Once production of the basic group III nitrides becomes more reliable and is scaled up, Wines and Ataca expect scientists to work on engineering the materials for specific applications using their results as a guide.

Back to basics…with supercomputers

Wines and Ataca modeled the materials’ properties using supercomputers. Rather than using experimental data as input for their models, “We are using the basics of quantum mechanics to create these properties. So the good part is we don’t have any experimental biases,” Ataca says. “We’re working on stuff that doesn’t have any experimental evidence before. So this is a trustable approach.”

To get the most accurate results requires huge amounts of computing power and takes a long time. Running their models at the highest accuracy level can take several days. 

“It’s kind of like telling a story,” Wines says. “We go through the most basic level to screen the materials,” which only takes about an hour. “And then we go to the highest levels of accuracy, using the most powerful computers, to find the most accurate parameters possible.”

“I think the beautiful part of these studies is that we started at the basics and we literally went up to the most accurate level in our field,” Ataca adds. “But we can always ask for more.”

Professor in building atrium
Can Ataca in the UMBC Physics Building. Photo by Marlayna Demond ’11 for UMBC.

A new frontier

They have continued to move forward into uncharted scientific territory. In a different paper, published within a week of the first in ACS Applied Materials and Interfaces, Theodosia Gougousi, professor of physics; Jaron Kropp, Ph.D. ’20, physics; and Ataca demonstrated a way to integrate 2D materials into real devices.

2D materials often need to attach to an electronic circuit within a device. An in-between layer is required to make that connection—and the team found one that works. “We have a molecule that can do this, that can make a connection to the material, in order to use it for external circuit applications,” Ataca says.

This result is a big deal for the implementation of 2D materials. “This work combines fundamental experimental research on the processes that occur on the surface of 2D atomic crystals with detailed computational evaluation of the system,” Gougousi says. “It provides guidance to the device community so they can successfully integrate novel materials into traditional device architectures.” 

close-up headshot
Theodosia Gougousi. Photo courtesy Gougousi.

Collaboration across disciplines

The theoretical analyses for this work happened in Ataca’s lab, and the experiments happened in Gougousi’s lab. Kropp worked in both groups.

“The project exemplifies the synergy that is required for science and technology development and advancement,” Gougousi says. “It is also a great example of the opportunities that our graduate students have to work on problems of great technological interest, and to develop a broad knowledge basis and a unique set of technical skills.”

Kropp, who is first author on the second paper, is thrilled to have had this research experience.

“2D semiconductors are exciting because they have the potential for applications in non-traditional electronic devices, like wearable or flexible electronics, since they are so thin,” he says. “I was fortunate to have two excellent advisors, because this allowed me to combine the experimental and theoretical work seamlessly. I hope that the results of this work can help other researchers to develop new devices based on 2D materials.”

Header image: Daniel Wines (far right), Jaron Kropp (second from right), Can Ataca (second from left) and other lab members meet. Photo by Marlayna Demond ’11 for UMBC.

UMBC researchers identify where giant jets from black holes discharge their energy

The supermassive black holes at the centers of galaxies are the most massive objects in the universe. They range from about 1 million to upwards of 10 billion times the mass of the Sun. Some of these black holes also blast out gigantic, super-heated jets of plasma at nearly the speed of light. The primary way that the jets discharge this powerful motion energy is by converting it into extremely high-energy gamma rays. However, UMBC physics Ph.D. candidate Adam Leah Harvey says, “How exactly this radiation is created is an open question.”

The jet has to discharge its energy somewhere, and previous work doesn’t agree where. The prime candidates are two regions made of gas and light that encircle black holes, called the broad-line region and the molecular torus.

A black hole’s jet has the potential to convert visible and infrared light in either region to high-energy gamma rays by giving away some of its energy. Harvey’s new NASA-funded research sheds light on this controversy by offering strong evidence that the jets mostly release energy in the molecular torus, and not in the broad-line region. The study was published in October in Nature Communications and co-authored by UMBC physicists Markos Georganopoulos and Eileen Meyer.

Adam Leah Harvey, photo courtesy A.L. Harvey.

Far out

The broad-line region is closer to the center of a black hole, at a distance of about 0.3 light-years. The molecular torus is much farther out—more than  3 light-years. While all of these distances seem huge to a non-astronomer, the new work “tells us that we’re getting energy dissipation far away from the black hole at the relevant scales,” Harvey explains.

“The implications are extremely important for our understanding of jets launched by black holes,” Harvey says. Which region primarily absorbs the jet’s energy offers clues to how the jets initially form, pick up speed, and become column-shaped. For example, “It indicates that the jet is not accelerated enough at smaller scales to start to dissipate energy,” Harvey says.

Other researchers have proposed contradictory ideas about the jets’ structure and behavior. Because of the trusted methods Harvey used in their new work, however, they expect the results to be broadly accepted in the scientific community. “The results basically help to constrain those possibilities—those different models—of jet formation.”

Eileen Meyer. Photo by Marlayna Demond ’11 for UMBC.

On solid footing

To come to their conclusions, Harvey applied a standard statistical technique called “bootstrapping” to data from 62 observations of black hole jets. “A lot of what came before this paper has been very model-dependent. Other papers have made a lot of very specific assumptions, whereas our method is extremely general,” Harvey explains. “There isn’t much to undermine the analysis. It’s well-understood methods, and just using observational data. So the result should be correct.”

A quantity called the seed factor was central to the analysis. The seed factor indicates where the light waves that the jet converts to gamma rays come from. If the conversion happens at the molecular torus, one seed factor is expected. If it happens at the broad-line region, the seed factor will be different.

Markos Georganopoulos. Photo by Tim Ford.

Georganopolous, associate professor of physics and one of Harvey’s advisors, originally developed the seed factor concept, but “applying the idea of the seed factor had to wait for someone with a lot of perseverance, and this someone was Adam Leah,” Georganopoulos says.

Harvey calculated the seed factors for all 62 observations. They found that the seed factors fell in a normal distribution aligned almost perfectly around the expected value for the molecular torus. That result strongly suggests that the energy from the jet is discharging into light waves in the molecular torus, and not in the broad-line region.

Tangents and searches

Harvey shares that the support of their mentors, Georganopoulos and Meyer, assistant professor of physics, was instrumental to the project’s success. “I think that without them letting me go off on a lot of tangents and searches of how to do things, this would have never gotten to the level that it’s at,” Harvey says. “Because they allowed me to really dig into it, I was able to pull out a lot more from this project.”

Harvey identifies as an “observational astronomer,” but adds, “I’m really more of a data scientist and a statistician than I am a physicist.” And the statistics has been the most exciting part of this work, they say.

“I just think it’s really cool that I was able to figure out methods to create such a strong study of such a weird system that is so removed from my own personal reality.” Harvey says. “It’s going to be fun to see what people do with it.”

Header image: The remnants of a star torn apart by a black hole form a disk around the black hole’s center, while jets eject from either side. Artist’s rendering courtesy of NASA.

Exploring Every Angle: Climate Research at UMBC

Researchers across UMBC are using unique, interdisciplinary approaches to explore global environmental challenges. Here are just three examples.

Lipi Mukherjee, Ph.D. ’20, atmospheric physics, developed an algorithm to identify the abundance and type of particles present just under the surface of the ocean. Her algorithm is 6,000 times faster than previous methods.

Anthony Bratt, Lipi Mukherjee, Dr. Pengwang Zhai,  and Dr. Meng Gao, courtesy of the UMBC Atmospheric and Oceanic Optics Group.
(left to right:) Anthony Bratt, Lipi Mukherjee, Dr. Pengwang Zhai, and Dr. Meng Gao, courtesy of the UMBC Atmospheric and Oceanic Optics Group.

“That’s the difference between impossible and doable,” says Mukherjee’s advisor, Pengwang Zhai, assistant professor of physics. Mukherjee trained her model to identify different particle types using neural network technology, rather than relying on existing observational data. This method “has the reliability as well as the speed” today’s scientists need, Mukherjee explains.

The model, which analyzes data collected by orbiting satellites, mostly detects colored dissolved organic matter (CDOMs). Some of these particles can be poisonous to sea life. They can also serve as a proxy for carbon stored in the ocean, which is important to understand in the context of climate change.

Zhai is excited to continue to validate Mukherjee’s model. He’ll also use her model to analyze data coming from three instruments that will launch with NASA’s PACE mission in 2024, including UMBC’s own HARP2.

Mukherjee has moved on to a position at the National Center for Atmospheric Research. She’s applying her knowledge of neural networks to interpret magnetic and thermodynamic properties of the sun’s atmosphere, which can lead to solar flares that interrupt GPS tracking and telecommunication systems. “That’s the beauty of the physics Ph.D.,” Zhai says. “You may not work on the exact same topic after you graduate, but your skill set is highly relevant.”

Answers in the air

Ruben Delgado, assistant research professor at the Joint Center for Earth Systems Technology (JCET), a UMBC partnership with NASA, studies a different resource: our air. Since a major air quality study over Chesapeake Bay in 2011, UMBC has gained national prominence for air quality research. Delgado’s group uses data collected by aircraft, satellites, and ground-based systems to understand where, when, and how much of certain pollutants appear near ground level.

The research led to new regulation that has decreased air pollution in the region. Impressed, the federal Environmental Protection Agency asked UMBC in 2016 to serve as the central hub for a fast-growing network of instruments. Delgado and his students analyze air quality data coming in from sites across the U.S. and Canada.

Delgado with a group of physics students in 2019 next to the observatory on the roof of the physics building.
Delgado, third from left, with a group of physics students in 2019 next to the observatory on the roof of the physics building. Photo by Marlayna Demond ’11.

The instruments at different sites produce raw data that look slightly different. It’s up to the computer science majors on the team to find ways to analyze it all efficiently and then visualize the results in a way that makes sense to the end user. 

Some of the students regularly post their findings on a website affectionately known as the “Smog Blog.” During the worst of this fall’s fires in the West, officials from Pennsylvania called to check on the status of blog posts. The governor expected daily updates on how the smoke was affecting local air quality—and their team was relying on the Smog Blog.

“That’s when we give the wake up call to the students: ‘By the way, your work is being used by government officials,’” Delgado says. “Some of them might not have previously thought at all that their coding skills would be useful for environmental research. It’s a point of pride for the students that their work is being used and highlighted.”

Phytoplankton to polar bears

Rather than collecting data at a distance via satellites, Nicole Trenholm spends much of her time on small boats in the Arctic Ocean, exploring everything from ocean currents to algal blooms to microplastics in ice cores. After earning a bachelor’s in geology, research missions to the Arctic with NASA made her want to pursue an advanced degree.

 “I was seeing things and making connections, but I was just a data delivery girl at the time,” Trenholm says. “I wanted to go back to school and learn how to lead the science myself.”

Trenholm on a research site. 
Photo courtesy of the Department of Geography and Environmental Systems.
Trenholm on a research site.
Photo courtesy of the Department of Geography and Environmental Systems.

Trenholm has a passion for messy questions about the relationships between melting Arctic glaciers and changes in the surrounding biological communities, from phytoplankton to polar bears. Those interests brought her to UMBC, where she is a Ph.D. student co-advised by geography and environmental systems professor Jeff Halverson and JCET scientist Kevin Turpie.

Trenholm is taking advantage of her fieldwork experience to bridge the gap between climate data collected from afar and ecological data collected on the ground. “I’m doing my best to not go one direction or the other, but really try to stay in between and help solve these crossover questions,” she says.

 “Glacier melt isn’t just influencing sea level rise—it’s also influencing the future health of marine ecosystems, fisheries, water quality—all this kind of stuff,” Trenholm adds. “And that’s a story that hasn’t been fully investigated at this point.”

On her next research cruise, she’ll be the only graduate student aboard with a group of senior researchers exploring currents in the Beaufort Sea north of Alaska. The trip will be exciting and educational, but it doesn’t come without risk.

“This is going to be one of the nastier times of year to be up in the oceans,” Trenholm says. “We’ll be out there fighting the seas, collecting data. I’ll be wearing a hard hat and be soaking wet most of the time.”

But she’ll be doing important work, gathering information to help scientists better understand our changing world. And, in the true spirit of a committed scientist, she continues, “It’ll be fun. I brought some audio books and my ukulele.”

*****

Learn more about Retrievers’ roles in researching climate change in the Arctic in this fall 2020 feature On Thin Ice.

Header imager: Delgado, standing, works with students in his lab in 2019. Photo by Marlayna Demond ’11.

BARD Fund honors UMBC’s Yonathan Zohar for aquaculture research with $12B global economic impact

The Binational Agricultural Research Development (BARD) Fund, a partnership program between the U.S. and Israel, has recognized Yonathan Zohar for the economic impact of his research. In a review of more than 1,300 projects funded by BARD in its 40-year existence, the selection committee found Zohar’s to be the project with the greatest impact.

Zohar’s research has enabled high-value commercial fish species such as Mediterranean seabream, European seabass (bronzino), salmon, and striped bass to be grown through hatchery-based aquaculture. This has resulted in an estimated $12 billion in economic growth. A virtual ceremony on November 10 recognized Zohar and representatives of two other projects.

Zohar, professor and chair of marine biotechnology at UMBC, received his first BARD grant in 1985 to investigate how fish reproduction is biologically controlled. Hatchery-based aquaculture was largely impossible at the time, because commercial species would not spawn in captivity. Instead, fish farmers relied on egg-bearing females collected from the wild to supply an often-unreliable source of eggs. Zohar’s work sought to help the aquaculture industry address this bottleneck by enabling captive reproduction.

“Without being able to complete the life cycle of the fish in captivity, namely producing eggs and juveniles, it is impossible to develop a reliable, reproducible, and cost-effective aquaculture industry of the species,” Zohar explains.

Two people kneeling next to fish tanks
Yoni Zohar (left) and Jorge Gomezjurado at the IMET Aquaculture Research Facility.

Never give up

A suite of environmental conditions initiates reproduction in the wild by triggering a series of hormonal responses. Rather than try to replicate a complex set of environmental factors in captivity, Zohar’s research aimed to determine how the necessary hormones were failing to initiate spawning in captive fish.

The result was surprisingly simple: He found a single hormone was responsible for jumpstarting a cascade of physiological processes that leads to reproduction, and this hormone malfunctioned in captivity. However, simply injecting captive fish with this hormone proved not enough to trigger reproduction.

Zohar was undeterred. Through painstaking, labor-intensive experiments (technology was much more limited in the 1980s), he found that the fish quickly degraded the injected hormone. It wasn’t staying in the fish’s system long enough to stimulate reproduction. 

After additional years of difficult work, Zohar was able to generate versions of the hormone that wouldn’t degrade in the fish. With this treatment, some females produced eggs, but the results still weren’t reproducible enough to be viable on a large scale.

The Institute of Marine and Environmental Technology, a collaboration between UMBC; University of Maryland, Baltimore; and University of Maryland Center for Environmental Science, in Baltimore’s Inner Harbor.

Transforming an industry

At this point, Zohar began to collaborate with Robert Langer, a chemical engineering professor at MIT and a pioneer in drug delivery systems. With a second round of funding from BARD in 1989, together they developed a delivery mechanism for the hormone that creates an extended-release effect, keeping the hormone in the fish’s system longer and—finally—reliably triggering reproduction.

For Langer, seeing his typically biomedical-focused work applied to the aquaculture industry is rewarding. “Now I’ve seen the drug delivery work that we started 46 years ago impact everything from the COVID-19 vaccine, to new treatments for cancer and heart disease, to cosmetics—and now aquaculture,” Langer says. “I’ve always felt the technology we developed would have a very broad impact and affect many fields, but the effect it has had on aquaculture would never have happened without the collaboration with Yoni.”

After developing the delivery system in Mediterranean seabream and Atlantic salmon, Zohar and colleagues successfully tweaked it for many other species. These advances enabled rapid growth and transformation in the aquaculture industry, delivering large amounts of a protein source and reducing overfishing of wild stocks.

Yonathan Zohar at the IMET Aquaculture Research Center with one of the fish tanks.

Keeping the mission in mind

Zohar is originally from Israel and has been in the United States since 1990, and he has been both the Israeli and American collaborator on grants from BARD. “I was always interested in developing collaborations between the U.S. and Israel, so for me, it was a priority to apply for BARD grants over the years,” he says.

For three decades, Zohar has been a mainstay of the marine biotechnology research community in Maryland. He first took a role at the former Center of Marine Biotechnology (COMB) housed in the Columbus Center in Baltimore’s Inner Harbor. Later, he served as COMB director for 14 years. When COMB restructured into the Institute of Marine and Environmental Technology (IMET) in 2011, Zohar joined the UMBC faculty while also serving as IMET’s director for its first year. Today he is professor and chair of UMBC’s marine biotechnology department.

Throughout his career, Zohar has kept his mission in mind. “When COMB was founded, the mission was always research, education, and economic development. And IMET is the same. This has really been my emphasis, my focus, for all of my professional life,” he says. “I was always involved in research that addressed societal benefits. As one of the early directors of COMB, I really worked to develop this philosophy of basic to translational research.”

What has kept Zohar in Maryland for thirty years, working to address societal needs and support a growing economy through science? “I found the environment here very conducive to that mission, and very supportive of it,” Zohar says. “So, I stayed.”

Header image: Yonathan Zohar at the Aquaculture Research Center at the Institute of Marine and Environmental Technology. All photos by Marlayna Demond ’11 for UMBC.

Sam Patterson, UMBC’s newest Rhodes Scholar, plans to transform transportation

Sam Patterson ’21, M29, is now the second student in UMBC history to receive a Rhodes Scholarship. Only 32 American students are awarded the prestigious scholarship each year, which supports graduate study at the University of Oxford in England. 

Patterson will pursue an M.Sc. in the Nature, Society, and Environmental Governance program at Oxford focusing on the economics of transportation. This research area will take full advantage of his three undergraduate degrees from UMBC. This spring, Patterson will earn bachelor of science degrees in mathematics and statistics and a bachelor of arts in economics. 

A Meyerhoff Scholar and member of the Honors College, Patterson has steadily nurtured his interest in transportation economics at UMBC and through intensive summer internships. He conducted research supported by the Alfred P. Sloan Foundation at Harvard University with the Harvard Leadership Alliance and at the University of Chicago’s Booth School of Business. Most recently, at the National Bureau of Economic Research, he evaluated trends in transportation changes in urban centers due to the pandemic.

A strong network of support has been a cornerstone of Patterson’s UMBC experience. “From the Meyerhoff Scholars program to the Honors College to Dr. Householder to Naomi Mburu [UMBC’s first Rhodes Scholar] to my recommenders and mock interviewers and beyond, I’ve never had so many people on my team before, pushing me to achieve something I’m pursuing,” Patterson shares.

A commitment to equity

Patterson’s mentors all point out how his intelligence, drive, and charisma are balanced by a deep humility and desire to pursue the common good—a core expectation of Rhodes Scholars.

“Sam has an exceptionally fine mind, and couples to it diligence and determination,” shares Simon Stacey, director of the UMBC Honors College. “He has a genuine capacity for identification with others, and a deep commitment to justice, equity, and equality.”

That commitment translates to Patterson’s research—current and future—in transportation economics. “Sam has a strong interest in economic research that can inform the debate on public policy questions,” says Tim Gindling, professor of economics.

“Sam is a deep critical thinker who looks at car culture and considers its effects not only on the environment, but also in how it shapes access to education, work, healthcare, food, and culture,” adds April Householder, director of prestigious scholarships. “He raises questions about how class and race intersect with suburban and city planning to limit people’s lives.”

Community connections

Sam’s instructors also appreciate the way he approaches his coursework, which goes far beyond how he maintains a 4.0 GPA. “His obvious interest and earnest engagement inspire students around him, contributing to the classroom community,” shares Liz Stanwyck, senior lecturer in mathematics and statistics. “He was equally comfortable in applied and theoretical classes, always willing to speak up but also a great listener, drawing his peers out and helping to develop ideas.”

Beyond the classroom, Patterson is a dedicated community member who values connecting with and supporting others. He performs and produces music and has volunteered with Creative Coders, an afterschool program that teaches coding skills to middle school students.

As a newcomer to Baltimore when he joined the UMBC community four years ago, Patterson has taken full advantage of the opportunities the area offers and managed to maintain interests outside of his demanding academic schedule.

“I found new hobbies, interests, and activities that I hadn’t really considered before; now they’re key to keeping me relaxed and centered,” Patterson shares. “Producing music with Retriever Music Society and running their instrumental group, JOIS, has been one of my greatest pleasures here. Going down to Arbutus and perusing the shelves of Now and Then Music and Universal Comics has been essential to my weekends and birthdays.”

A transformative opportunity

Originally from Marietta, Georgia, Patterson’s education and internships have taken him around the U.S. However, he has never traveled abroad, so the Rhodes Scholarship offers a unique opportunity for him to broaden his perspective by studying in the U.K. and visiting other European countries. He hopes to further deepen his understanding of challenges—and potential solutions—related to a range of transportation systems. 

“I’m so excited to go to the U.K.! I think it will do wonders for my research when I experience the European perspective on public transportation and its place in society and sustainability,” Patterson says. “There are so many brilliant academics at Oxford that I’m raring to meet. I just feel so fortunate to be where I am and to be going where I’m going.”

After Oxford, Patterson already has plans to attend Harvard University for a Ph.D. Before he gets there, though, Patterson and his mentors have no doubt the Rhodes experience will be transformative.

“The Rhodes Scholarship is a life-changing opportunity for exceptional young people with the potential to make a difference for good in the world. Sam has that mixture of grit and excellence that is the best of what UMBC represents,” Householder says. “His experience in the U.K. will enrich not only his academic path, but also his personal journey in so many profound ways. I can’t wait to see what he will accomplish.”

Chasing Antibodies

Today, many Americans are asking themselves versions of this question: “Was that bad cough I had in January COVID-19?” Without comprehensive nationwide testing, it’s been impossible to measure in real time the total number of Americans who have been exposed to SARS-CoV-2, the virus that causes COVID-19. However, there is another way to come up with a reliable estimate, and Kaitlyn Sadtler ’11, biological sciences, is leading the charge.

The 10,000-participant study Sadtler is orchestrating at the National Institutes of Health (NIH) will look for antibodies to SARS-CoV-2 in volunteers’ blood, allowing the research team to estimate just how many people have been infected across the country—whether they had symptoms or not. The research team used U.S. Census data to select a representative sample of Americans based on factors such as age, sex, race, and geographic location. The project originated with a Twitter conversation about how Sadtler could use her expertise to support the current crisis.  

Portrait by Bret Hartman/TED.

“I think that a lot of people, including anyone with an immunology background, or a relation to infectious disease, was just sitting there thinking, ‘Okay, what can I do to help in this situation?’” says Sadtler, an Earl Stadtman tenure-track investigator at the National Institute of Biomedical Imaging and Bioengineering, a division of the NIH. “Because that’s what scientists want to do—we’re problem solvers, we love puzzles.”

“Mail-in blood”

The original plan was to collect a few hundred samples from the DC metro area. But bringing hundreds of people to NIH to draw their blood would increase the risk of spreading the coronavirus. Instead, they mailed volunteers finger-prick test kits they could use at home and then send back.

“Once we had that realization that we could mail in blood, the study expanded very rapidly,” Sadtler says. However, even she and her team didn’t expect the overwhelming response to their call for volunteers. More than 400,000 people emailed expressing interest, which necessitated writing code to sort through the volunteers’ information and ensure a representative sample.

Sadtler’s team and partners at the University of Alabama-Birmingham and University of Pittsburgh enrolled 11,000 volunteers and sent them their test kits. Then, Sadtler’s team collected and analyzed the samples as they were delivered to her laboratory at the NIH. By the end of September, the team had finished measuring antibodies in more than 10,000 samples, their target number.

Now, they’re analyzing the data, and they hope to have the information publicly available in the coming weeks. The results, Sadtler says, “will give us a statistically robust viewpoint of how many people have actually probably had this thing.”

Digging through the data

There are other questions the data can help answer, too, like how the disease differentially affects certain groups. Because volunteers supplied a range of information about themselves, the researchers can start to tease out the roles of different demographic factors on the disease.

For example, the virus has disproportionately affected Black people in the United States. Sadtler’s data may help explain whether race itself correlates with a greater chance of disease exposure and poor outcomes, or if effects of the disease more closely track factors like education level, employment status, or access to healthcare, which often follow racial lines in the U.S.  

“There’s a lot to dig out of the data. Our team plans on releasing useful data as quickly as possible, but we will be mining and analyzing this data set for months to come,” Sadtler says.

Engineering mindset

So what comes next? “We do it again—twice,” Sadtler deadpans. The National Cancer Institute’s Serological Sciences Network has granted funding to repeat the study with the same participants six months and 12 months after the first round. Among other things, the repetition will allow the research team to see how the antibody response changes over time. That information will help determine whether booster doses will be required for an eventual vaccine, as they are for some other diseases whose immune responses fade, and potentially start answering some questions about re-infection rates.

three women at graduation
Sadtler, right, at her UMBC graduation with her mom and sister, Samantha Bennett ’09.

The COVID-19 study aligns with Sadtler’s other projects, which focus on the body’s immune response to medical device implants and wound healing. Her work sits at the interface of engineering and immunology, and she works closely with people from a range of academic backgrounds. “I end up feeling like a bit of a translator sometimes,” she says.

It’s her “engineering mindset,” as Sadtler describes it, that’s helped her succeed. She says she’s always asking, “Is there an easier way that we could approach this? Is there an engineering solution to this problem?” which helps her come up with novel solutions other biologists might not initially consider.

A wide lens

Sadtler in part credits her broad education at UMBC for her ability to bridge different fields. “Something that I really liked about UMBC was that it was so focused on undergraduate education, and really making it a good environment for undergraduates to learn,” she says.

She took courses like plant physiology, physics, and organic chemistry, all of which she loved. “I was able to experience biology as a whole, and learn different ways that different fields learn within biology, so I could figure out what my niche was,” she says.

In Sadtler’s last semester, Tamra Mendelson, professor of biological sciences and her academic advisor, offered her a position working on her research. So, “Before starting a postbac in immunology at the NIH, before going into just focusing on cells in a petri dish in the lab, I was out in gaiters helping collect fish in streams across Maryland,” Sadtler recalls. “I loved the opportunity to see what the evolution and ecology side of biology was like, and I really enjoyed it.”

Retriever refresh

girls playing rugby
Sadtler, center, with her rugby teammates.

Sadtler’s UMBC experience wasn’t all academic. She played on the women’s rugby team for almost all of her four years, half of them with her sister, Samantha Bennett ’09, biological sciences. “It was a great outlet and a great group of women,” she says. “I still keep in touch with women from the team.”

Fortunately, Sadtler and her sister got along well. “I loved having my sister in the same university as me,” Sadtler shares. They even purposely took a psychology class together during Sadtler’s sophomore year.

Now, Sadtler can’t wait to return to the campus, once it’s safe to do so, to witness big changes like the addition of the Performing Arts and Humanities Building, the UMBC Event Center, and the Interdisciplinary Life Sciences Building. But her top priority is visiting the UMBC Bookstore to refresh her Retriever wardrobe. 

Whatever the reason, and no matter how busy she is with her important research, Sadtler will always be a Retriever wanting to come home, she says. “I can’t wait to make my way back to UMBC.”

******

Retrievers are on the front lines of COVID-19 research.

UMBC faculty and alumni have been putting their expertise to use since the beginning of the pandemic. In addition to Kaitlyn Sadtler‘s NIH study, Kizzmekia Corbett ’08, M16, biological sciences, is moving her vaccine work forward, with a 95 percent efficacy rate. UMBC President Freeman Hrabowski and his wife Jackie are participants in the Moderna vaccine trial, showing what leadership looks like in action.

Zoë McLaren, associate professor of public policy, writes about how COVID-19 cases are surging upward around the U.S. but rapid testing might allow a turnaround by a massive scale-up of testing. Katherine Seley-Radtke, professor of chemistry and biochemistry, chimes in her expertise to explain what makes some drugs work against viruses and how others aren’t effective treatment of SARS-CoV-2.

Header image: Kaitlyn Sadtler on stage at her TED talk. Photo by Ryan Lash/TED.

NASA awards UMBC team $1.4M to develop AI that improves how computers process climate data from satellites

Data archives from NASA’s Earth Observing System Data and Information System (EOSDIS), which collects data from satellites, aircraft, and ground instruments, currently contain about 31 petabytes (PB) of data. That’s 31 followed by 15 zeros, or 31 million billion bytes. Within three years, the archives are expected to hold more than 150 PB, and keep adding nearly 50 PB every year.

“Now we have so much raw data. So how do we analyze it? How do we make it useful for the research community?” asks Jianwu Wang, assistant professor of information systems and affiliated faculty at UMBC’s Joint Center for Earth Systems Technology (JCET), a partnership with NASA. 

While Earth scientists are encountering this glut of satellite data, researchers in computing fields are rapidly increasing the capabilities of artificial intelligence and machine learning technologies. At the same time, there is an increasingly urgent need to better understand Earth’s systems as they shift due to climate change.

All of these factors drove Wang and his collaborators to find ways to help researchers access useful information collected by Earth-observing satellites much faster. A new $1.4 million award from NASA’s Advancing Collaborative Connections for Earth System Science (ACCESS) program will make their work possible.

Headshot, man in pink shirt and glasses
Jianwu Wang. Photo courtesy Jianwu Wang.

Taking computers to cloud school

The ACCESS project focuses specifically on improving how algorithms process and learn from the data satellites collect about clouds. At any moment, clouds cover about two-thirds of Earth’s surface, and yet understanding of their role in global climate is still lacking. Zhibo Zhang, associate professor of physics and a co-PI on the project, and his research group have been working to enhance knowledge about clouds’ role in regulating the global energy balance and precipitation.

To understand how clouds work in the global system, scientists need the data that instruments orbiting Earth on satellites collect. But the data needs some analysis before it’s useful. For example, when an instrument in a satellite looks at the Earth, it can detect things like brightness and color. But it can’t decide if it’s looking at a cloud or a clear sky. That’s the job of computer algorithms that scientists apply to the data after it’s collected. 

Clouds can vary greatly in their appearance, so the computer needs to learn what different kinds of clouds look like. That way it can report “cloud” when its data meet the definition. That process of teaching the computer to learn from examples is called “machine learning.”

Zhibo Zhang and members of his research group. Clockwise from lower left: Atmospheric physics Ph.D. students Qianqian Song, Chamara Raja, and Kevin Zheng; Zhibo Zhang; and Olivia Norman ’21, physics. Photo by Marlayna Demond ’11 for UMBC.

To train the computer algorithm, researchers feed the computer data that’s already labeled as “cloud” or “not-cloud.” Eventually, the computer learns to tell the difference on its own, and can report accurately whether an image it’s never seen before is a cloud or not. A good algorithm can learn to tell the difference between a cloud, smoke, dust, and other kinds of particles found in the atmosphere.

It’s all connected

One goal of the new project is to generate these training data sets. At the most basic level, it is somewhat similar to asking humans to complete captchas asking them to “click the boxes that include clouds,” but millions of times, and with significant added challenges and complexity. 

For example, clouds cast shadows on each other and interact in other ways. So when the computer is trying to make a judgment about a given pixel in an image, it actually needs information about the surrounding pixels as well. Those interactions can extend far beyond what’s right next door. When looking at a spot in Maryland, for example, “You don’t only need to know about Maryland, you need to know about New York,” Zhang says.

An image of clouds above Earth collected by the Visible Infrared Imaging Radiometer Suite (VIIRS) instrument, which sends its data through the Earth Observing System Data and Information System (EOSDIS). Find more images available through EOSDIS. Photo by NASA / VIIRS.

To address this challenge, the team will generate numerical simulations, as opposed to direct observational data collected by the satellite, to help define in computer code the ways clouds and other particles interact with each other in the atmosphere.

Using those complex simulations, “We can know which pixels are affecting their surroundings or being affected by their surroundings. That way, we’ll have a totally connected network that we can use to train the algorithms,” Zhang says. “Even observations cannot tell us which pixel is affecting which pixel. Only numerical simulations can do that.”

Decoding the data

Another important part of their work will make it possible to transfer knowledge between two different categories of instruments. The first type, active sensors, are extremely accurate but only observe a very small portion of the sky: All of them together only watch about 10 percent of Earth’s surface. Passive sensors, on the other hand, are a little less accurate but, combined, look at nearly the whole globe.

Sanjay Purushotham. Photo courtesy Sanjay Purushotham.

“These sensors collect different kinds of data,” and all of it is valuable, says Sanjay Purushotham, assistant professor of information systems and another co-investigator on the project. A major challenge for the team is coming up with algorithms that allow computers to use all of the available data—from both kinds of sensors—to define clouds and their interactions in ways a computer can understand.

“You cannot use any off-the-shelf machine learning or deep learning model to solve this problem,” Purushotham says.

The magic of AI

All of this algorithm development takes a lot of resources and human energy. However, the team is working to automate some parts of the process. Right now, “It’s always difficult to duplicate an algorithm designed for one instrument for other, similar instruments, or even for the same instrument on a different platform,” explains Chenxi Wang, a co-PI on the project and an assistant research scientist with JCET. “Even subtle changes in the instrument or the platform’s orbit can cause the original algorithm to fail.”

“You have to develop almost a brand new algorithm,” C. Wang adds. “You have to adjust parameters, check the stability of the algorithm,  and do evaluation… You have to do everything again. And that can take from six months to several years.”

Chenxi Wang. Photo courtesy Chenxi Wang.

C. Wang hopes to help the computer learn to do the translations itself, based on an understanding of the fundamental physics. All a human would have to do is give the program certain parameters about the instrument and the satellite it’s traveling on.

“I think that’s the magic of machine learning and artificial intelligence,” says C. Wang. “The hope is that instead of years, it will take only a few days or at most a week. It will save a lot of time and resources.”

“We’re developing this process so it can be universal and applied to any instrument,” adds Zhang. “It’ll liberate some scientists from repeating the same things again and again to fine-tune the algorithms.” It will also get data to scientists like him much faster. As he notes, “If you have to wait for many years to get that useful data, it’s harder to make progress.”

The power of partnership

UMBC’s long-term partnership with NASA has helped make this project possible. “The special connection between UMBC and NASA through JCET has definitely prepared us better for this kind of proposal,” Zhang says.

Belay Demoz, director of JCET and professor of physics at UMBC. UMBC also maintains two other partnerships with NASA, the Geoplanetary Heliophysics Institute (GPHI) and the Center for Space Sciences and Technology (CSST). Photo by Marlayna Demond ’11 for UMBC.

In addition, a confluence of advances has given fresh impetus to this kind of work. For one thing, demand for climate data is on the rise, given the increasing visibility of the climate emergency. “Cloud observation is a high priority for NASA today. No one knows just how much clouds are contributing to climate change and other things,” J. Wang says. “That’s why we chose this topic, because it’s so important to understand Earth.”

Parallel advances in machine learning and data collection further fuel the effort. “Even two or three years ago we couldn’t have done this,” J. Wang reflects.  

In the end, though, it comes down to collaboration. Each member of the team of data scientists and atmospheric physicists brings a unique perspective and knowledge base.

“We have good synergy among the team members, so we can speak the same language even though we come from different disciplines,” Purushotham says. “That helps us understand what the real problems in the data are, and what innovations we need to solve them.”

Banner image: The VIIRS instrument captured this image of bands of cirrus clouds off the southwest coast of Australia in 2019, which portend intense weather. Photo: NASA.

UMBC receives $900K from Maryland E-nnovation Initiative Fund to bolster Sinha Professorship in Statistics

Professor Bimal Sinha, who founded UMBC’s statistics department in 1985, is a beloved and decorated faculty member who has helped transform UMBC into a national leader in statistics education. He’s also transformed the lives of countless students, some of whom have gone on to become leading statisticians around the globe.

After more than 30 years at UMBC, in 2015, Sinha and his family decided to take their commitment to the university even further. Sinha and his sons, Jit and Shomo Sinha, pledged $750,000 to create the Dr. Bimal Sinha Professorship in Statistics at UMBC. The professorship will permanently fund a new statistics faculty position at UMBC. The family was joined in their commitment by 40 alumni and friends of the university. This summer the total endowment stood at $900,000.

This week, the Maryland E-nnovation Initiative Fund (MEIF), administered by the Maryland Department of Commerce, announced that it would match the amount currently pledged to the endowment with an additional $900,000. That will bring the total endowment of the professorship to $1.8 million. The fund is still open to receiving additional contributions to optimize the MEIF match and strengthen the endowment long into the future.

“Bringing the MEIF to UMBC will further enhance the university’s statistics program and its reputation, increasing our ability to recruit talented faculty and students from diverse backgrounds,” shared President Freeman Hrabowski.

Bimal Sinha speaks at the African International Conference on Statistics in Limpopo, South Africa. Photo courtesy Bimal Sinha.
Bimal Sinha speaks at the African International Conference on Statistics in Limpopo, South Africa. Photo courtesy Bimal Sinha.

Statisticians in demand

The department’s researchers specialize in many areas, including machine learning and big data analysis. The work of statisticians is often behind the scenes of headlines about other fields, such as cybersecurity, artificial intelligence, genomics, and drug development. According to the Bureau of Labor Statistics, statistics is one of the fastest growing career fields in the nation.

By supporting the Sinha Endowed Professorship, “MEIF is playing a crucial role in connecting philanthropy to the economic development mission of Maryland’s research universities,” shares Greg Simmons, vice president for institutional advancement. “MEIF is a compelling resource to universities and research parks like bwtech@UMBC as we work to build Maryland’s innovation economy.” 

Teamwork delivers

Putting together the proposal for the MEIF funding demonstrated the teamwork ethos at UMBC. New Associate Vice President for Alumni Engagement and Development Stacey Sickels Locke, who assumed her role in May, spearheaded the effort. With close collaboration from the College of Natural and Mathematical Sciences and the mathematics and statistics department, the team was able to rapidly develop a compelling proposal ahead of a tight deadline.

Bimal Sinha (foreground, right) speaks with young scholars at the 4th African International Conference on Statistics in Limpopo, South Africa. Photo courtesy Yehenew Kifle.
Bimal Sinha (foreground, right) speaks with young scholars at the 4th African International Conference on Statistics in Limpopo, South Africa. Photo courtesy Yehenew Kifle.

In addition to thanking Locke, Simmons, and Dean Bill LaCourse of the College of Natural and Mathematical Sciences, “I would like to thank and applaud the entire statistics faculty for springing into action and making this grant application possible,” shared Animikh Biswas, professor and chair of mathematics and statistics. “Their strong effort resulted in our proposal being funded.”

“Finding out that the MEIF grant had been funded was wonderful news, which is desperately needed in these difficult times,” LaCourse says. “I’m proud of the outstanding efforts of the faculty in statistics and Animikh’s leadership. The endowed professorship is an honor Bimal richly deserves after decades of meaningful contributions to UMBC.”

Supporting scholars of the future

The UMBC community also values this grant as a chance to recognize the impact Sinha has had on the university, his field, and students around the world.

“Kudos to Dean Bill LaCourse for his leadership, and to Professor Bimal Sinha for his amazing body of work,” Hrabowski shares. “Bimal has not only engaged in groundbreaking research for decades, but has also produced and championed an impressive number of influential Black statisticians throughout Africa.” 

Sinha has spearheaded the African International Conference on Statistics, held in a different African country each year since 2014. In 2018, UMBC signed a memorandum of understanding with the University of Limpopo in South Africa to foster collaboration and exchange. A number of graduate students from African countries have also flourished with Sinha’s mentorship.

Bimal Sinha gives the opening address at the 4th African International Conference on Statistics at the University of Limpopo, South Africa, in 2017. Photo courtesy Yehenew Kifle.
Bimal Sinha (foreground, right) speaks with young scholars at an African International Conference on Statistics. Photo courtesy Bimal Sinha.

Sinha’s sons remember that beyond his academic accolades, the way their father has always interacted with his mentees is what made the deepest impression—whether meeting international students at the airport or inviting groups of students to their family home for dinner.

“We are proud of the contributions our father has made to the Department of Mathematics and Statistics,” Jit and Shomo shared in a statement. “Equally importantly, we believe that now more than ever, the health and growth of public higher education institutions such as UMBC play a pivotal role in advancing opportunities for the next generation of students.”

Leaving a legacy

Today, Sinha finds himself in the enviable position of approaching the sunset of his career knowing that he has made a significant positive impact on the lives of countless people, from his students and colleagues to his family. The results of his compassion, his leadership, and his generosity will ripple even farther than his impressive contributions to the field of statistics.

“When I joined UMBC in 1985, I could not have imagined the growth and success the university would go on to experience over the subsequent 35 years. I feel honored and fortunate to have played a small role in the evolution of this beloved institution,” Sinha says. “I am grateful to my colleagues, students, collaborators, friends and administrators for their partnership. Through this gift, I want to ensure that future generations of leading scholars will view UMBC as an attractive home to advance their contributions to the field of statistics.”

To learn more about ways to support UMBC, visit giving.umbc.edu.

Banner image: President Freeman Hrabowski (pointing), Bimal Sinha (foreground), and Duguma Adugna, President of Aris University in Ethiopia, take in the view from the roof of the UMBC Administration Building in October 2019. Photo courtesy Yehenew Kifle.

UMBC duo using math to reveal how and why cells move with new NSF grant

Cell migration—how, when, and why cells move—has important implications for understanding development and diseases such as blood cell disorders, rheumatoid arthritis, and metastatic cancer. Michelle Starz-Gaiano, associate professor of biological sciences, has learned a great deal about cell migration from observing Drosophila melanogaster, the humble fruit fly, in her lab. She’s also learned that experimental tools have their limitations.

“We have fantastic genetic tools in Drosophila, and we have great live imaging, so we can get pretty far doing that,” Starz-Gaiano says. “But then we encounter things that we can’t explain.”

That’s where her decade-plus collaboration with Brad Peercy, associate professor of mathematics, comes in. In their partnership, Peercy develops mathematical models to represent the movement of cells across developing eggs in the fly ovary. Now, a three-year, $370,000 NSF grant will support the duo as they combine their expertise to further explore the regulation of cell movement.

“I think this project has really big implications for how we think about development and how organs and tissues function,” Starz-Gaiano says, “because it’s looking at aspects that people haven’t yet paid attention to.”

A fresh perspective

Scientists can learn a lot about cell migration through experimental approaches like those Starz-Gaiano employs. However, some experiments are too complex or too expensive to attempt without a powerful reason to believe they will reveal new and useful information.

Turning to mathematical modeling has been particularly helpful for pointing wet lab scientists in the right direction before they invest in complicated experiments. “The collaboration has been incredible in making the best predictions for how to explain confusing results. It’s enabled us to narrow down the set of things to test,” Starz-Gaiano says.

Brad Peercy working from home this fall. Photo courtesy Brad Peercy.

For example, cell migration in the fruit fly ovary happens in several complex stages. Chemical signaling and the geometry of the ovary both play a role in regulating the process. “There are lots of different interesting features that are ripe for having a mathematical framework put around them,” Peercy says, “and the math can sometimes point to looking at something a little bit differently than biologists might otherwise.”

Now the challenge is that the math has pointed to certain attributes of the migration process that may be impossible to test in a live organism with today’s technology. “The models that Brad’s group has made are so compelling that now we have to figure out if we can show that biologically,” Starz-Gaiano says. “That’s a big focus of some of the work in the lab now.”

Uncharted territory

This new grant focuses on the math side of the work. Peercy and Starz-Gaiano have been collaborating since 2008, when they partnered to work with undergraduates as part of the former, NSF-funded Interdisciplinary Training for Undergraduates in Biological and Mathematical Sciences program.

Since then, Peercy and his team have developed several models for different aspects of the cell migration process. The next step is “integrating some of the models that we’ve already developed into a more comprehensive model of the system,” he explains. For that, Peercy and Starz-Gaiano will benefit from the computational expertise of Matthias Gobbert, professor of mathematics, who is another co-investigator on the grant. He will help make the computational processing more efficient, and therefore feasible in a reasonable amount of time.

Another aim of the project is to further investigate a set of chemical reactions, known as a signaling cascade, involved in triggering cell migration. “The signaling cascade that the model is for is very well conserved across species, and it’s implicated in a lot of human diseases,” Starz-Gaiano says. “The model pointed to a certain kind of regulation that hasn’t been very well explored, so we want to follow up on that.”

woman in front of brightly colored mural
Michelle Starz-Gaiano in the UMBC Biological Sciences Building. Photo by Marlayna Demond ’11 for UMBC.

The team will also work to better understand how the restricted space of the egg chamber affects how cells and chemical signals move, and how that affects cell migration. “Being able to map that complicated geometry into a computational framework is something we’re interested in,” Peercy says. For this part of the project, they’re collaborating with Tagide deCarvalho, director of UMBC’s Keith R. Porter Imaging Facility.

Looking at the space between cells is a new area of research. “People haven’t done that,” Starz-Gaiano says. “They just think this one sends a signal and that one gets it and it’s over, and we’re saying, well, what happens in between?” Failure of a signal to reach its final destination can contribute to some birth defects, Starz-Gaiano explains. She also wonders if the same could be true for some cancers.

A new approach

As scientific discovery marches onward, researchers in fields that were once seemingly disparate find themselves relying on each other more and more. “The biology is insufficient to capture what’s going on, so we need different approaches,” Starz-Gaiano says.

Collaborations between researchers in different fields can be tricky to navigate, as each side learns to speak a new language and engage in different ways of thinking. But when everyone involved is on board, the results can be groundbreaking.

“You see strong collaborations between experimentalists and theoreticians when they are willing to sit in uncomfortable situations,” Peercy says. That might mean a biologist thinking about differential equations or a mathematician trying to understand the reproductive process of a fruit fly.

Peercy and Starz-Gaiano’s easy rapport and long history of working together makes it clear that they’ve crossed that bridge and are comfortable taking on the unknown together. They recognize the benefits that combining their unique research skill sets can offer.

“The only way that you can solve complex problems now is to use multiple strategies at the same time,” Starz-Gaiano says. “And increasingly, that’s what we’re faced with in biology—these problems are too complicated for one method to tackle them.”

Banner image: Michelle Starz-Gaiano (right) works with Jeffrey Inen ’18 in her lab. Photo by Marlayna Demond ’11 for UMBC.