All posts by: Sarah Hansen, M.S. '15


UMBC participates in national study on Ph.D. career pathways at pivotal moment for new grads

UMBC is one of 29 universities nationwide joining forces to better serve Ph.D. students by examining the broad range of pathways they take from graduate school to career. The Ph.D. Career Pathways study is backed by the National Science Foundation and Andrew W. Mellon Foundation and organized by the Council of Graduate Schools. It will provide much-needed data on graduate students’ experiences and perspectives at a pivotal moment when career possibilities for Ph.D.s are changing substantially and universities are searching for ways to better prepare students for opportunities and challenges ahead.

“The assumption that the Ph.D. is primarily a pathway to the professoriate is just not the case,” says Janet Rutledge, dean of the UMBC Graduate School. “We’re hoping that by being part of this study, we will determine the best ways to focus our time and our resources to most effectively guide our students.”

UMBC and Morgan State University are collaborating as partners in the study, which will include students in graduate programs across the humanities and STEM. Morgan is the only participating HBCU, and UMBC is one of only six Minority-Serving Institutions, and the only one outside of the University of California system. The diversity of participating institutions will be essential to the study’s success, Rutledge notes, explaining, “If we’re trying to get a view of what the pathways are for students then we need to have a variety of universities represented.”

In addition to the Ph.D. Career Pathways study, UMBC is participating in the Coalition for Next Generation Life Sciences, which will investigate graduate program alumni pathways specifically in the life sciences. This study is led by Johns Hopkins and University of California, San Francisco, and also includes UMBC, Cornell, MIT, University of Michigan, University of Pennsylvania, and University of Wisconsin.

Of course, Rutledge points out, “Before you can survey alumni, you need to find out where they are.” Funding from the two projects together will support a graduate student research assistant to gather that information through contacting alumni networks, scouring social media, and interviewing department chairs and faculty.

In addition to supporting current UMBC students, Rutledge hopes UMBC’s participation in the Ph.D. Career Pathways study will help students considering pursuing a Ph.D. at any institution. “People undertake Ph.D.s without always having a full sense of what the experience will be like or what it could mean for their future,” she says. “We want to have more transparency for current and prospective students to help them understand job and career pathways with a Ph.D., and how you go about finding opportunities.”

Rutledge also sees great potential for this kind of research to help grow universities’ relationships with companies, government agencies, and other non-academic research institutions, which are often trying to reach talented researchers early in their careers. Connecting UMBC graduate students with internship and work opportunities through these partners could help those students access broader career opportunities, help employers access a highly skilled and diverse talent pool, and boost research collaborations and resource sharing among partners.

Already, successful partnerships of this kind have been “a win-win for the mentor and the student,” says Rutledge.

Ph.D. Career Pathways surveys, developed by the Council of Graduate Schools, will be implemented this year, with the first data coming in next fall. Rutledge and her team are excited to be part of such an important national study in graduate education, but their focus always comes back to the scholars they work with every day. “We really want to understand the pathways of our current students and our alumni, as well as learn how other universities support their graduate students, so that we can better serve UMBC graduate students of today and of the future.”

Image: New UMBC graduate students get to know each other and learn about ways to become involved at the Graduate Student Information Fair. Photo by Marlayna Demond ’11 for UMBC.

UMBC researchers win USDA grants to improve safety and efficiency of fish farming industry

Global demand for fish is growing quickly, but many species are already severely overfished, leaving scientists and industry experts searching for ways to more safely and efficiently farm fish. In response, two UMBC research teams are developing revolutionary innovations for off-shore fish farming, to help mitigate the risks of disease and escapes in captive fish populations. Both recently received extremely competitive awards from the U.S. Department of Agriculture (USDA) to pursue their work further.

Yonathan Zohar, professor and chair of marine biotechnology, explains that the teams’ work “makes the point of how you can use advanced approaches and strategies of biotechnology to open some of the major bottlenecks in the aquaculture industry.”

Any time a large number of individuals of any single species is in a confined space—from fish to chicken to trees—disease can spread easily, as all members of the group share the same vulnerabilities. That’s why farmers vaccinate their animals against each species’ most common foes. For rainbow trout and salmon, two of the most popular food species in the United States, one danger is infectious hematopoietic necrosis virus (IHNV).

An effective vaccine to protect fish from IHNV is available, but it must be injected individually into every fish at a cost of $0.30 per dose. That makes its application extremely labor-intensive and expensive. Vikram Vakharia, professor of marine biotechnology, has taken on the task of developing a new oral vaccine for IHNV that can be delivered in fish food, which would drastically reduce labor and costs.

To produce the vaccine, Vakharia infects cabbage looper larvae (a common moth species) with a virus that is genetically engineered to produce the protein that comprises the outer shell of IHNV, surrounding its genetic material. By freeze-drying and grinding up the larvae, sprinkling the powder on fish food pellets, and feeding the augmented food to fish, the protein gets into the fish’s system and triggers immunity to the disease without making them sick. “I’m using insect larvae as a factory” to produce the protein, which serves as a vaccine, Vakharia explains.

A new USDA grant Vakharia has received will enable him to focus on improving the delivery mechanism’s efficiency to ensure all fish in a treated population are protected. “Here is an approach to provide a new generation of vaccines that are edible,” says Zohar. “The possibility of delivering the vaccine through the feed is a major breakthrough.”

Ten-Tsao Wong, assistant professor of marine biotechnology, and Zohar are tackling a different issue facing off-shore fish farms: the risk of escapee fish. Wong’s project doesn’t prevent fish from escaping from their pens, but it renders them sterile, limiting the ecological damage they can do if they ever escape.

Because escaped farmed fish would be unable to mate with wild fish, wild populations would be protected from taking up genetic material from captive fish, which could be detrimental to the wild populations’ survival. This also would prevent captive fish from acting as an invasive species that eventually eradicates native individuals.

Just recently, thousands of non-native Atlantic salmon from a floating net pen farm in the Pacific Northwest escaped, with the potential to out-compete native salmon, causing widespread concern in the fishing industry as well as among scientists and environmentalists. “We want to limit this kind of risk,” Wong says. “Once you have a sterile fish, even if they escape, they’re not able to reproduce.”

In addition, sterile fish “can be more cost-effective,” says Wong. “Because they don’t develop gonads [reproductive organs], they can put more energy into muscle development.” In addition, reproductive hormones can weaken a fish’s immune system, so sterile fish can be more robust in the face of health threats.

Rather than genetically modifying the fish, which would make them a GMO food and alienate some consumers (as well as be illegal in the U.S. aquaculture industry), Wong simply places fish eggs in a bath containing a drug that, at a specific, early window in development, prevents their reproductive organs from growing later on. In an initial trial, Wong’s technique had an 84 percent efficacy rate in salmon. “The technology is working, and the conditions need to be optimized,” he says. “The new funding will help us move forward and enhance the efficiency.”

Vakharia and Wong were selected as the only award recipients in their respective categories in a call for proposals from the USDA this spring, and both projects were supported at maximum funding levels—an expression of the agency’s belief in the importance of the work.

For both projects, “the proof of concept is there,” says Zohar. “Now it’s about optimizing the system so it can be a tool for the industry.”

Image: The Institute of Marine and Environmental Technology on Baltimore’s Inner Harbor, which houses UMBC’s marine biotechnology department. Photo by Marlayna Demond ’11 for UMBC.

UMBC marine biologist Colleen Burge works to save world’s oysters from deadly herpes virus

Colleen Burge, UMBC assistant professor at the Institute of Marine and Environmental Technology, made a splash with her new article in The Conversation warning of the danger posed by a herpes virus that is decimating oyster populations around the world. Burge conducts research seeking out genes that trigger disease resistance in oysters, potentially offering one path toward protecting this valuable, and vulnerable, marine animal.

Infection by the herpes virus, known as OsHV-1, is usually fatal for Pacific oysters, “the world’s most popular and valuable oyster species,” Burge writes. The Pacific oyster is native to Asia, but the virus has been wreaking havoc on transplanted oyster populations worldwide, from Tasmania to France, since its emergence in the 1990s. Making things worse, the virus has recently mutated to form several “microvariant” strains that are even more deadly. Burge was a member of the team that discovered the virus in two bays along the California coast for the first time in the early 2000s, but so far no microvariants have been found in North America.

“Given the spread of the OsHV-1 microvariants elsewhere around the world, it may only be a matter of time until they reach U.S. coastal bays or other non-impacted oyster growing areas,” Burge writes. That means finding a way to prevent massive oyster die-offs, which have already happened in other parts of the world, is important to save the species.

Beyond their economic and cultural value to the fishing industry, oysters are also prized for the work they do to support aquatic environments. Each oyster can filter up to 50 gallons of water per day and oyster reefs provide habitat and food for fish, including popular commercial species. The spread of a deadly infection among oysters could put all this at risk.

Oysters can’t be vaccinated against the virus, because their immune systems lack the “memory” that benefits more complex organisms, Burge explains. “The most effective strategy to date has been developing disease-resistant oyster lines, which can limit both mortalities and oysters’ susceptibility to infection,” she says, but even that technique comes with caveats.

To test disease resistance, scientists must infect oysters with the virus. Placing those oysters into a wild population that hasn’t previously been exposed to the virus is too great a risk, so scientists are only able to try this technique in areas where the virus already exists, limiting its use. Traditional selective breeding could also produce disease-resistant oysters. Burge is taking it one step further, looking directly for genes involved in resistance.

Burge emphasizes that “the most effective way to limit damage in new locations from OsHV-1 is to limit its spread.” If that becomes impossible, however, introducing resistance will be critical. “Oysters can’t move themselves out of harm’s way, nor can we move all susceptible oysters,” she writes, “so we need to protect them where they grow.”

Colleen Burge’s article, “A deadly herpes virus is threatening oysters around the world”, has been viewed  more than 146,000 times and republished by Smithsonian Magazine, The Raw Story, Phys.org, The New Food Economy, and others.

Image: Oysters. Photo by Paul Asman and Jill Lenoble, used under CC BY 2.0.

UMBC to build on success in shrinking carbon footprint through updated Climate Action Plan

UMBC has begun the process of establishing an updated climate action plan, building on substantial success in decreasing the university’s carbon footprint over the past decade and a continued commitment to environmental stewardship.

In 2007, President Freeman Hrabowski signed the American College and University Presidents’ Climate Commitment, pledging that UMBC would pursue carbon neutrality and serve as a leader in decreasing energy usage. In 2009, UMBC established its first climate action plan outlining specific goals, such as achieving carbon neutrality by 2075, initiating and completing an energy performance contract to achieve long-term energy savings, and increasing sustainability initiatives through a dedicated sustainability program. During the period of tremendous growth that would follow—growth in both UMBC enrollment and square footage of the main campus—UMBC actually cut emissions by 17 percent.

Since UMBC joined the President’s Climate Commitment, all newly constructed campus buildings have been LEED certified, and facilities management staff have upgraded older buildings with more efficient lighting, heating, and cooling systems to decrease electricity use per square foot by 22 percent. UMBC now has more than 100 green campus features, including rain gardens, green roofs, and ponds of all sizes that offset paved areas, help restore local waterways, and support wildlife. UMBC has also implemented measures to support a reduction in emissions from transportation, such as incentivizing carpooling, getting Zipcars on campus, offering UMBC Transit services and establishing a bike share program.

Building on this work, and joining universities, business, and municipalities across the nation in a commitment to uphold the spirit of the Paris Climate Accord, UMBC has initiated a process to establish an even stronger climate action plan for the future. Tanvi Gadhia ’09, environmental studies, and now UMBC’s sustainability coordinator, explains that “technology is changing really quickly around renewable energy, and the science around climate change is developing, too. Knowing that it’s a rapidly evolving area, we want to stay on top of it as opposed to just operating on cruise control.”

To develop the updated plan, UMBC’s Climate Action Steering Committee is beginning with two campus-wide community gatherings on September 25 where members of the university community can share their ideas. Next, working groups will tackle specific aspects of the plan informed by lessons learned through implementing UMBC’s previous and current sustainability programs. Such initiatives include the Green Office Program for staff, Eco-Ambassadors for students, and the recently-formed Faculty Learning Community for faculty seeking ways to incorporate sustainability into their teaching and research.

Drafting a new climate action plan is an opportunity to bring these different constituencies together to develop goals, define strategies, and set aggressive timelines for progress. “Although UMBC has made significant progress in reducing its carbon footprint, it is clear that our carbon neutrality goals need to be more aggressive,” says Lenn Caron, UMBC’s assistant vice president for facilities management. “By tapping into the talent and expertise residing at UMBC, we hope to establish new goals that both challenge UMBC and allow for a more rapid reduction of our carbon footprint.”

“UMBC is a community that recognizes climate change as a critical, global issue,” says UMBC President Freeman Hrabowski. “As we increase the sustainability of our campus and involve more students, faculty, and staff in this work, we are producing researchers and leaders with the insights and skills to address this complex challenge.”

Learn more about sustainability at UMBC at the Sustainability Matters website.

Banner image: Eco-ambassador Toluwanimi Bello ’17, chemical engineering, and Tanvi Gadhia (right) on Patapsco Hall’s green roof.

All photos by Marlayna Demond ’11 for UMBC.

UMBC dedicates new Earth and Space Institute, building on decades of NASA collaboration

On the third floor of the UMBC Physics Building, a glass sign with crisp white lettering announces UMBC’s newest research center: the Earth and Space Institute (ESI).

The institute includes a prototyping lab, operations center, and offices, but it is also much more than a collection of rooms, explains Karl Steiner, UMBC’s vice president for research. The ESI is a physical home for the interdisciplinary earth and space science UMBC researchers do with support from NASA, NOAA, and other federal agencies as well as collaborators around the world. It’s a hub where scientists, engineers, and students will take UMBC’s earth and space research to the next level.

The ESI, administered by UMBC’s College of Natural and Mathematical Sciences (CNMS), joins a set of other distinguished UMBC research centers, including the Center for Space Science and Technology (CSST), Goddard Planetary and Heliophysics Institute (GPHI), and Joint Center for Earth Systems Technology (JCET), all of which are collaborations with the NASA Goddard Spaceflight Center in Greenbelt, Maryland.

CNMS Dean Bill LaCourse believes NASA has served as “a role model and inspirational force,” that has led people to reach for the stars for generations, and he is excited to expand UMBC’s collaborative work with NASA. “The Earth and Space Institute is our opportunity to reach for new heights,” he shares. “To take that chance in the name of science, commitment, passion, and basic human curiosity.”

At a ribbon cutting for the new space, leaders from the three other centers, as well as the director of NASA Goddard, gathered to discuss current projects and ideas for future collaborations. They emphasized the strong and ongoing relationship between UMBC and NASA, which is only expected to deepen with the dedication of the new institute.

“It’s great to be here. The partnership with UMBC is just fantastic,” said NASA Goddard director Christopher Scolese. “All this happens because of the strength of your work, and we should say thank you to all of you,” added UMBC President Freeman Hrabowski, speaking to the scientists in the room. “It takes researchers to produce researchers.”

Vanderlei Martins, professor of physics and director of the new institute, describes the ESI as a place “to develop new technologies and new science in earth and space fields.” Martins is currently working on HARP, a CubeSat mission intended to launch within the next year. But he and other UMBC scientists have their eyes on an ever bigger goal: a full-blown NASA mission with their equipment on it. The ESI will make planning and successfully proposing such a mission a real possibility.

Another important aspect of the institute is its role as a platform to boost collaboration across disciplines. “We want to collaborate even more with Goddard on the engineering side, on the science side, on the education side,” says Martins, noting that this could mean pulling in faculty and students at all levels and from a broad range of focus areas.

Jane Turner, director of CSST, shares that “one of our important roles is to connect our graduate and undergraduate students to mentors and project opportunities at Goddard”—a goal the new ESI shares. Lorraine Remer, a JCET research professor, adds that recruiting UMBC students to careers at NASA or other federal agencies via experiences with UMBC collaborative centers could also play a role in diversifying the federal workforce, because of UMBC’s strong track record for supporting the success of students from all backgrounds in STEM fields.

Alan Yeakley, chair of geography and environmental systems, also envisions opportunities for the ESI to utilize the social sciences in its work. “I see geography and environmental science as the connective tissue between the natural sciences and the social sciences,” he shares. Data collected by NOAA satellites, for example, can contribute to public health research on air quality, urbanization, and the effects of climate change.

The ESI is intended to bring the UMBC community together in new ways, just as it came together to support the institute’s creation. “It takes a community—a wide spectrum of people giving support from all kinds of directions—to bring something like this together,” LaCourse says. From the crews that renovated the space to university administrators at the highest level, “There has been cross-campus support… This is a university facility that was a feat to get off the ground, and now it’s here.”

“The Earth and Space Institute leverages our resources and expands our potential,” LaCourse says. Inspired by NASA, “it allows UMBC to dream bigger and reach higher.”

Banner image: Dean LaCourse addresses guests just before they cut a ribbon at the entrance of the new Earth and Space Institute to dedicate the space. From left to right: Felicia Jones Selden ’81, biological sciences, director of applied engineering and technology at NASA Goddard; UMBC President Freeman Hrabowski; Chris Scolese, director of NASA Goddard; Colleen Hartman, director of sciences and exploration at NASA Goddard; Michael Hayden, UMBC professor and chair of physics; Bill LaCourse, dean of UMBC College of Natural and Mathematical Sciences; UMBC Provost Philip Rous (behind Dean LaCourse); Vanderlei Martins, ESI director and UMBC professor of physics; Karl Steiner, UMBC vice president for research.

All photos by Marlayna Demond ’11 for UMBC.

Belay Demoz, director of JCET and leading climate scientist, elected as a fellow of the American Meteorological Society

Belay Demoz has been part of UMBC’s Joint Center for Earth Systems Technology (JCET) since its founding more than 20 years ago, and has been serving as its director since 2014. In his decades as a climate scientist, he’s published countless scientific papers, organized dozens of professional conferences, and has become known as a dedicated mentor committed to fostering a more inclusive culture in meteorology. This year, Demoz adds to his long list of professional accolades a notable new honor: election as a fellow to the prestigious American Meteorological Society (AMS).

Demoz grew up in Eritrea at a time of significant drought, famine, and conflict. As one of few Eritreans to receive the opportunity to earn an undergraduate degree, he became determined to use his education to make a difference for his country. “Hardship is the greatest teacher,” he shares.

After obtaining his bachelor’s degree, Demoz read an article about cloud seeding, a form of human-directed weather modification typically intended to induce rain and snow. Then, he saw an advertisement for a graduate program in physics at University of Nevada-Reno, and a lightbulb went off in his mind. He applied, was accepted, and in 1986, after his family put up their home as collateral to enable his exit, he departed Eritrea for graduate school in the United States.

In his distinguished career, Demoz has led several major scientific projects, such as the International H2O Experiment (IHOP) in 2002, which collected measurements of water vapor and other particles in Earth’s atmosphere, and documented characteristics of cirrus clouds, wispy high-altitude clouds whose role in climate is still poorly understood. Demoz also continues to lead the Plains Elevated Convection at Night (PECAN) project, a collaboration between NASA, the National Oceanic and Atmospheric Administration, the National Science Foundation, and the Department of Energy that seeks to understand nighttime, warm-weather precipitation over the United States’ Great Plains and similar environments.

Currently, Demoz is involved with a project that collects climate data from a global system of weather balloons known as GRUAN. The only university-run station is in Beltsville, Maryland—a collaboration between Howard University and UMBC. Demoz, who was previously professor and director of graduate studies in the department of physics and astronomy at Howard, continues to collaborate with the university and attends most of the station’s weekly balloon launches.

While Demoz’s research focus has shifted over the years, his dedication to supporting fellow researchers, especially students and junior faculty from underrepresented groups, has never wavered. He especially enjoys the combined educational and research orientation of the center he directs, JCET, which is a collaboration between UMBC and the NASA Goddard Space Flight Center in Greenbelt, Maryland. “JCET is unique because of its educational focus,” Demoz shares. “I’ve always believed in the goal of JCET to connect scientists and students.”

As a scientist who recalls the experience of being one of very few people of color to attend professional conferences in his field, Demoz is also proud to see climate science become increasingly diverse and inclusive. A new collaboration between UMBC, NOAA, Howard, and the City University of New York, funded last fall through NOAA’s Educational Partnership Program with Minority-Serving institutions, will encourage even more supportive connections between students and climate scientists from a wide range of backgrounds. Demoz is excited to see this new partnership take off, and would like to see more multi-agency collaborations that bring students and professional scientists together.

“Belay Demoz epitomizes inclusive excellence in all aspects of his being, demonstrating his exemplary character in his roles as director of JCET, professor of physics, and informal mentor,” shares Bill LaCourse, dean of the College of Natural and Mathematical Sciences, which administers JCET. “The college and his colleagues are very proud of him, and we are fortunate that he is a member of the UMBC community.”

Image: Belay Demoz at NASA Goddard Space Flight Center. Photo by Marlayna Demond ’11 for UMBC.

UMBC undergrads conduct pharmaceutical research at UMB through new partnership

Arissa Falat ‘18, biochemistry and molecular biology, knew last spring how she wanted to spend her summer vacation: making new discoveries in a lab. She did just that, working with Steven Fletcher, associate professor of pharmaceutical sciences at University of Maryland, Baltimore (UMB) to create mimics of tiny protein structures that could fight cancer by disrupting the mechanism that allows tumors to grow unchecked. Each day she painstakingly carried out complex synthesis reactions, purification processes, and verification techniques to move the project forward.

Falat is one of eight UMBC undergraduates who worked full time in UMB pharmaceutical sciences labs this summer as part of a new internship program sponsored jointly by UMB and the UMBC Office of the Provost, and managed at UMBC by the Office of Academic and Pre-professional Advising. The students presented their work at both a UMB poster session and UMBC’s Summer Undergraduate Research Fest, held in August.

Ken Baron, assistant vice provost for academic advising and student success, coordinates the program at UMBC. He is committed to helping students “get grounded in their career areas early,” and focuses on connecting students at all levels—not just juniors and seniors—with research opportunities.

Zachary Clifford ’20, chemistry, has enjoyed the opportunity to do impactful hands-on research early in his undergraduate career. Clifford’s work for Maureen Kane, associate professor of pharmaceutical sciences, involves analyzing data sets to identify small molecules that may be biomarkers for damage caused by radiation exposure. It was a big shift from the inorganic chemistry research he did in high school, but Clifford says it helped him recognize that “data analysis is a very important part of the scientific process.” He intends to pursue a research career and already plans to work with Zeev Rosenzweig, professor and chair of chemistry and biochemistry at UMBC, this fall.

Alexandra Morris ’19, biochemistry and molecular biology, says the internship taught her “so much beyond what I learned in class”—knowledge that can really only be gained through lab experience. She worked to modify the structure of a common cancer drug to reduce its toxicity to healthy cells in the lab of Fengtian Xue, assistant professor of pharmaceutical sciences. “It was really rewarding because I had a clear goal,” she shares. Morris hopes to pursue a clinical internship next summer, and to continue her education after UMBC with a Pharm.D.

Additional participants this summer were Kellie-Ann Kelly ’19, biological sciences; Cierra McKoy ’20, biological sciences; Temiloluwa Okusolubo ’19, biological sciences; Racheal Spruill ’19, biological sciences; and Anh Tran ’18, biochemistry and molecular biology.

Previous participant Joanna Lum ’19, biological sciences, is now a year out from an influential internship with Peter Swaan, professor of pharmaceutical sciences. She believes strongly in the lasting impact of summer lab internships. “Before this experience, I had no idea what working in a lab was like, let alone considering it as a career,” she shares, but “after spending eight consecutive weeks learning and asking questions in the lab, I began loving what I was doing, and I started seeing myself doing this in the future.” Now she does research in the lab of Erin Green, assistant professor of biological sciences, and intends to pursue graduate school in the biomedical sciences.

Baron is excited to continue to formalize and expand the internship program as part of the growing connections between UMBC and UMB. Developing a new program to provide diverse, faculty-guided research opportunities for undergraduates involves a lot of moving parts, but, Baron says, it also represents “the best of what a university can do for its students.”

Banner image: Kellie-Ann Kelly ’19 discusses her research at a UMB poster session. All photos by Marlayna Demond ’11 for UMBC.

UMBC’s 20th Summer Undergraduate Research Fest spotlights emerging science talent from across the nation

Marking the last weeks of the season, UMBC’s University Center Ballroom buzzed with a contagious energy last month as more than 150 undergraduate and high school students from across the U.S. shared the results of summer research they had conducted with UMBC faculty and graduate student mentors.

“It is a privilege to have so many students coming from far and near to participate in the authentic research experience UMBC provides,” shared Dean Bill LaCourse, of the College of Natural and Mathematical Sciences. As he told the crowd gathered for UMBC’s 20th Summer Undergraduate Research Fest (SURF), “It’s not cookbook—it’s real science we’re doing here.”

LaCourse acknowledged that spending a summer away from home can be challenging, but by immersing themselves in their summer research, students also gain “another community: a scholarly community.”

To kick off the day’s program, five groups of students presented their research, beginning with Kaaliyah McDowell, of Morgan State University, and Carl Bannerman, Community College of Baltimore County, who explained their study exploring phages (viruses that infect bacterial cells) in nearby freshwater sources. The team also included Jonathan Poole, of Gallaudet University, and Jackson Narrett ‘17, biological sciences. Together, they worked with Tagide deCarvalho, manager of UMBC’s Keith Porter Imaging Facility, through the STEM BUIILD program.

Angelie Matar, a rising junior at Louisiana State University, shared her progress in improving a chemotherapy drug delivery mechanism. Working with Marie-Christine Daniel-Onuta, associate professor of chemistry and biochemistry, Matar succeeded in attaching a drug molecule and a fluorescent dye to gold nanoparticles, which creates “a more efficient, multi-functional nanoparticle for chemotherapy,” that also reduces chemotherapy’s toxicity to healthy cells, Matar explained.

Caroline Larkin ’17, bioinformatics, is researching cancer from a very different angle. Working with Daniel Lobo, assistant professor of biological sciences, she’s using artificial intelligence to create a computer program that will decode how different cell types within a tumor interact to influence its growth, metastasis, or collapse. The eventual goal is personalized medicine, by using a similar program to predict what course of treatment would be most effective at destroying a particular tumor in a particular patient.

Adam Ring, a rising senior at Emory University, participated in this summer’s SCIART fellowship, a collaboration between UMBC, Johns Hopkins, and the Walters Art Museum in Baltimore. Ring and fellow SCIART participants Chloe Cao, rising senior at Johns Hopkins University, and Hope La Farge, recent alumna of the University of British Columbia, worked with Daniel Rowlands, visiting lecturer in chemistry and biochemistry at UMBC, and Terry Drayman-Weisser, retired director of conservation and technical research at the Walters, to develop techniques for determining the origins of illegal ivory. By detecting trace metals in ivory samples, the team could locate the ivory’s origin based on which water sources the elephants consumed. The findings are critical to helping governments crack down on illegal poaching and ivory trade.

Students also expressed how much the summer experience meant to them as they prepare to make choices about their futures. Mark Minnis ’18, information systems, spent his summer working in the UMBC lab of Amy Hurst, associate professor of human-centered computing, as well as a makerspace she developed in Baltimore for local high school students. There, Minnis helped to devise and implement a more effective workflow system for student staff members, which gave him a broader sense of the possibilities for a research career. He shared, “I had an amazing experience.”

Chelsea Mikal worked with Lee Blaney, associate professor of chemical and environmental engineering, to measure the absorbance characteristics of sunscreens. Sunscreens can end up in waterways, and the light they absorb can affect photosynthetic life. Mikal is a rising junior at Mt. Hebron High School in Howard County. Though not yet an undergraduate, she already knows where her research interests lie. The experience has “definitely pushed me in the research direction,” she shares, “and Dr. Blaney is an amazing mentor.”

Dean LaCourse encouraged these presenters, and the dozens of others who participated in SURF, to be proud of their work, not just for how it helped them grow as researchers, but also as tangible contributions to their scientific fields. “I assure you that your discoveries have added to scientific knowledge, which in the end benefits society through empowerment,” he shared.

As the students prepared to return to their homes and universities across the nation, LaCourse reflected that the UMBC student research experience would always be a part of them. “Hopefully,” he said, “this summer we’ve lit a flame of passion that will drive you to greater undertakings.”

Banner image: Students discuss their summer research during a SURF poster session. All photos by Marlayna Demond ’11 for UMBC.

UMBC receives NSF grant to launch first-of-its-kind big data and high-performance computing training for researchers across disciplines

Today, data of all kinds is generated at a nearly incomprehensible rate, creating endless opportunities for advances in fields from health care to education. Yet plucking meaningful insights out of an overwhelming amount of information can be challenging, leading many researchers to seek out a firmer understanding of data science.

“On one hand, we have tons and tons of information, and on the other hand, we get lost in this information,” explains Zhibo Zhang, associate professor of physics, “so the question is how we can get something meaningful, something useful, from this ocean of data.”

Zhang and three UMBC colleagues will help researchers address this issue head-on with a unique interdisciplinary course for graduate students, postdocs, and junior faculty that will launch in spring 2018. The project is funded by a three-year National Science Foundation grant, with the expectation that after an initial on-campus test run, the program will be refined and expanded to reach researchers nationwide.

The students in the course will spend at least one-third of their time working on interdisciplinary research projects with colleagues from other fields, under the mentorship of one of the faculty.  “In this program, we are teaching the latest technology to the students, but also letting them do research together,” explains Jianwu Wang, assistant professor of information systems and the principal investigator on the grant.

“Often we use a siloed approach, where each discipline sticks to itself,” says Aryya Gangopadhyay, professor and chair of information systems. Instead, this team’s approach creates opportunities “to leverage the multidisciplinary nature of problem-solving that is required” to address challenging, complex questions in the real world.

The new course will accept students studying atmospheric physics, information systems, and applied mathematics with a focus on high-performance computing. Moving forward, the team hopes to include a wider variety of researchers, with the goal to complement training in their disciplines with stronger computing and complex data analysis skills.

“Data and computing are becoming two more pillars of science in all fields,” explains Wang, who sees strengthening collaborations across disciplines as beneficial to all. “We need each other,” he says. “For us, in information systems, we can get more concrete challenges to solve, and for scientists in other fields, they can learn from the techniques. Together, we can solve the multi-pronged challenges the world is facing today.”

In atmospheric physics, for example, pulling climate trends out of mountains of data from NASA and other sources is important, but it’s impossible to process vast quantities of complex climate data effectively and efficiently with outdated tools and training. “I used to be able to do everything on my laptop,” remembers Zhang, “but now you can’t put your data on a laptop. You have to put it on a huge data server.”

That’s where collaborations with information systems researchers and high-performance computing experts come in. “In traditional analytics, data is loaded in the memory of a computer, but in big data analytics, the data might be much larger than the machine can handle,” explains Gangopadhyay. “So how do you deal with that? New algorithms must be designed.”

The fourth participating faculty member, Matthias Gobbert, professor of mathematics and faculty lead of UMBC’s High-Performance Computing Facility initiative, notes that NSF’s full funding of the grant proposal indicates this area is a priority for the agency, and his collaborators explain why. “There are no such training programs nationwide,” says Wang. As compared to industry, “for scientific research, we have specific challenges.” Gangopadhyay adds, “Big data analytics is arguably one of the most sought-after skill sets in today’s IT world.”

“In a way, we are training a new type of scientist, a new generation of scientists,” Zhang says. These scientists will access and analyze data in new ways, often relying on computing techniques previously unnecessary in their fields. And now that the four colleagues have begun working together, Zhang sees future collaboration opportunities in every new paper he reads. “They’re just popping up everywhere.”

The team acknowledges that there will be hurdles along the way to changing how researchers understand and utilize data science, first and foremost teaching a group of students who are already all highly trained, but in vastly different fields. Zhang shares, “I think the challenge will be fitting it all together.”

Still, the team is excited and optimistic. “This type of work is only possible by people who have an adventurous spirit,” says Gangopadhyay. “Sometimes, taking risks is the only way to do something meaningful. And we are ready for the challenge.”

Check cybertraining.umbc.edu for updates on the program.

Image: Data servers at the climate computing facility at Goddard Space Flight Center in Greenbelt, Maryland. Photo by Flickr user ep_jhu, used under license CC BY-NC 2.0.

 

 

 

UMBC’s Tom Cronin explains how some animals “see without eyes”

In the last few decades, the scientific community has produced mounting evidence that many animals can “see” with cells all over their bodies. What purposes do these cells serve and how do they work? Earlier this month, Tom Cronin, professor of biological sciences, described this phenomenon—where animals’ cells detect light (“photoreception”) for purposes other than image-forming vision—in an article for The Conversation, which has since appeared in outlets such as Scientific American, Salon, Inverse, and Flipboard and received more than 36,000 views.

“Many animals—including human beings—do have specialized light-detecting molecules in unexpected places,” Cronin writes, explaining that they’re most often found in cells in the central nervous system and skin, but also in blood and internal organs.

In humans, light-detecting cells are highly concentrated in the retina at the back of the eye. Scientists used to think that only the classic “rod” and “cone” cells involved in conscious vision detected light there. Cronin writes that in the early 2000s, “the discovery…of other cells in a mouse retina that respond to light came as a shock.”

All light-detecting cells contain proteins called opsins, and the newly discovered mouse eye cells contained a new type of opsin protein the researchers named melanopsin. The quest to find more opsins in other animals and in other body locations was on, and new technology made it much easier. Cronin explains, “The advent of inexpensive and efficient molecular genetic technologies has made the search for opsins a cottage industry in laboratories worldwide.”

Previously unknown light-detecting cells have now been found in animals from cuttlefish to birds, as well as in plants. “Now that we know that these photoreceptors can be found throughout animals’ bodies, what in the world are they actually doing?” asks Cronin.

Cuttlefish, octopus, and squid (cephalopods) have light-detecting cells called chromatophores all over their skin, he explains. Scientists understand these cells serve to “actively control their color or pattern for several reasons, most often for camouflage (to match the color and pattern of the background) or to produce bright, prominent signals for aggression or attracting a mate.”

The cells that detect light in plants are aptly named “cryptochromes,” reflecting the lingering mystery of how they work. Although scientists still have many questions about cryptochromes, they agree that they play a role in plant growth and annual reproductive cycles. Cryptochromes also appear able to assist some birds in navigation using Earth’s magnetic field.

In humans, photoreceptor cells that aren’t involved in conscious vision are known to regulate subconscious functions like pupil size, body temperature, and sleep-wake cycles. This helps explain why some blind people still have typical circadian rhythms.

Recent research has also indicated a possible role for non-image-forming vision in learning ability, mood, and the sensitivity of conscious vision, Cronin explains. Plus, melanopsin has been spotted in mouse blood. “Since humans are likely to have the same system,” he writes, “this could partially explain the increase in heart attacks in the morning, which are perhaps associated with blood pressure changes occurring at that time.”

Scientists have made notable progress toward understanding unconscious vision in the last few decades, but there is much left to learn. “We know nonvisual light detection is ubiquitous and significant in the lives of animals,” Cronin writes, and “future research will continue to untangle its effects on human health and well-being.”

Read Tom Cronin’s complete article, “Seeing without eyes—the unexpected world of nonvisual photoreception” at The Conversation.

Image: Two cuttlefish, which are known to have light-sensing cells throughout their skin. Photo by Joi Ito via Flickr, shared under CC BY 2.0.

UMBC’s Jason Link leads development of cosmic ray detector headed for International Space Station

A white box the size of a refrigerator, called Cosmic Ray Energetics and Mass (CREAM), will head to the International Space Station (ISS) this month, thanks to the work of UMBC astrophysicist Jason Link and colleagues. Inside, four scientific detectors will work together to detect cosmic rays coming from far flung regions of the universe. The instruments will transmit the data from the ISS to Earth, to scientists reckoning with the tantalizing question, “What is the universe made of?”

Link, an astrophysicist with UMBC’s Center for Space Science and Technology, part of the recently-renewed CRESST consortium, is a co-investigator on the project and the technical lead for one of the detectors. Cosmic rays, particles from beyond the solar system, arrive with hundreds of times more energy than the Large Hadron Collider particle accelerator can produce, Link explains. Some of these particles will pass through the detector and interact inside, where they break up into a “shower of subatomic particles.” CREAM’s goal is to measure the composition and energy of individual particles, which will help scientists deduce where the rays came from and what phenomena caused them to accelerate so much.

Are the particles produced by supernovae or perhaps merging binary stars? “If we get into what accelerates the cosmic rays, we’re getting into one of the murky mysteries of science,” Link says.

Link has been working for more than 15 years on hardware to detect cosmic rays, including a version of CREAM that has taken seven balloon flights above Antarctica. Sending instruments to space poses new challenges, and also creates new opportunities.

“Balloons have a relatively short mission life,” Link shares, usually only a few dozen days. “But going up on the space station, you’re now talking about years.” Also, “When particles enter Earth’s atmosphere, they start to interact,” Link says. That means data analyses must incorporate a correction factor to account for these interactions, which introduces error. That’s much less of a problem in space.

Research instruments traveling to the ISS must reckon with constraints on size and mass, and be able to withstand extreme vibration. Link’s balloon-based instruments didn’t fit these constraints, so he and colleagues from NASA Goddard Space Flight Center, Penn State, and Northern Kentucky University undertook the challenge of building a new detector, based on the balloon detectors, that could safely survive the rigors of a rocket launch and deploy on the International Space Station.

The new detector can also collect additional scientific measurements.  It can distinguish between negatively charged electrons and positively charged protons, based on the way they interact inside the detector.

“Designing a new detector from scratch on the limited budget for building balloon hardware required creativity, innovation and a bit of luck,” Link notes. “We did it and it successfully passed all of the environmental and safety requirements for deployment on the ISS.”

Colleagues from Kyungpook National University in South Korea built a detector that serves the same purpose, but with a different approach. Together, Link says, the two detectors provide a powerful way to distinguish between electrons and protons, and quickly verify findings, specifically because they use different techniques.

Link looks forward to diving into the data the instruments send from outer space. “If we see an excess of electrons,” he says, “that suggests that there is a local source of cosmic rays. That’s not something we expect.” That discovery would spur further research into what and where the source might be.

Instruments on CREAM will also help physicists better understand the “cosmic energy spectrum,” Link says. The energy of detected rays falls along a spectrum, with many more rays coming in with lower energies, and very few at the highest energies. The number of rays at each energy level falls off in a smooth curve, but, Link says, “There’s a kink in the cosmic energy spectrum,” where there’s an unexpected bump up in the number of rays with a specific energy. Scientists are very interested in what might be causing that kink, and CREAM is intended to help explain it.

Beyond the potential for groundbreaking scientific discovery about the fundamental makeup of the universe, the CREAM launch is special for Link. “This is the first time that I’ve actually built something that’s going to go into space,” he says.

Scientists are often heavily involved in designing instruments and analyzing the resulting data, but most of the time the actual construction of space instrumentation is handed over to engineers and technicians with specialized expertise. Not this time. “Yes, I actually tightened bolts and wired sensors on the detector,” Link is proud to report, “and it’s going to fly in space.”

 

Image: Sunrise from the International Space Station. Photo provided by NASA, captured by a member of the Expedition 52 crew.

The CREAM mission is headed by Dr. Eun-Suk Seo at the University of Maryland, College Park.  NASA’s Wallops Flight Facility in Virginia provided overall management of CREAM and integration for space station deployment, led by Linda Thompson. The full project team includes scientists from the United States, France, Mexico, and South Korea.

New study by UMBC’s Chris Swan finds restoration efforts more effective in small, isolated streams

A new study led by Chris Swan has found that stream restoration efforts such as bank stabilization, tree planting, and streambed manipulations have a greater impact on stream life in small headwaters than in larger streams. “Larger streams are more well-connected to populations of species that are tolerant of disturbance, but smaller streams are more isolated, so the actual manipulation for the restoration has a stronger effect on who’s there,” he explains.

The findings suggest that “restoration practices would be most effective in areas where community structure and biodiversity are driven primarily by local factors, i.e., isolated sections of networks,” write Swan, professor of geography and environmental systems, and co-author Bryan Brown of Virginia Tech, in Ecological Applications. “Our results amplify the call for a larger scale perspective on river restoration.”

The study compares adjacent restored and unrestored sections of five headwaters and eight large streams in Maryland. Over the course of a year, Swan, Brown, and lab technician Charles Wahl spent hundreds of hours at the 13 sites, kicking up the streambed to drive tiny invertebrates, just two to 10 millimeters long, into nets. Back in Swan’s lab, the researchers used microscopes to painstakingly identify each organism. Caddisfly and may fly larvae were most common, with a variety of beetle larvae and snails rounding out the catch.

Data analysis revealed that restored sections of headwaters supported 15 to 37 percent more species than unrestored sections next door. However, in large streams, the restoration had no discernible effect on biodiversity. Also, the restored headwaters were more likely to sustain stable communities of organisms, whereas large streams were more likely to gain and lose species in both restored and unrestored sections. Swan suggests the differences may exist “simply because we haven’t appreciated completely the way these organisms move around.”

Swan is also quick to point out that restorations are undertaken for a variety of reasons, and invertebrate diversity is not the only measure of success or failure. In general, “Just because invertebrates didn’t respond, doesn’t mean restoration didn’t do its job.”

Still, Swan notes, these results are important because “this is one of the few studies that finds restoration is context-dependent.” He hopes the study will encourage people to think more thoroughly about how factors like species dispersal and river network connectivity impact biodiversity, ideally trickling up “to the state level, or even the EPA level” to inform future investments in restoration efforts.

It’s notable that the small headwaters most improved by restoration are also the most vulnerable. “When we develop a landscape, the first thing we do is mow over or bury headwater streams, because it’s easy to do—or we put them in a pipe,” Swan says. Plus, “Headwater streams are 60 percent or more of all stream miles in a river network, so they’re disproportionately at risk of being lost.” The good news? “They’re the cheapest to restore, because they’re so small.”

Swan, Brown, and additional colleagues at UC-Riverside and the National Science Foundation’s National Ecological Observatory Network have received a new grant from the NSF, which also funded the current study, to expand on this work by looking at species dispersal in river networks at the watershed level. If a species’ population is declining in a well-connected stream, it may be replenished (or “rescued”) by migration of individual organisms from a nearby stream. In an isolated headwater, that’s much less likely, and the species is more likely to disappear in that location. In their upcoming research, Swan and colleagues will ask, “How does that scale up to the entire watershed and help us understand how biodiversity persists through time?”

Swan hopes the team’s work on species dispersal patterns will further inform practical decisions about investments in supporting healthy streams. The current study was a step in the right direction, he says, demonstrating that “we can do this at a realistic scale,” and showing scientists as well as non-profits, citizens, and lawmakers that this work is “something that matters.”

Learn more from the complete article, Metacommunity Theory Meets Restoration: Isolation May Mediate How Ecological Communities Respond to Stream Restoration in Ecological Applications.

Chris Swan is also known for his research on urban ecology. Learn more from “Urban nature: What kinds of plants and wildlife flourish in cities?” in The Conversation.

Image: Chris Swan speaks at the Green Lab at Light City in Baltimore, April 2017. Photo by Marlayna Demond ’11 for UMBC.